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SPDYE4 (speedy/RINGO cell cycle regulator family member E4)

Identity

Alias_namesspeedy homolog E4 (Xenopus laevis)
Other alias-
HGNC (Hugo) SPDYE4
LocusID (NCBI) 388333
Atlas_Id 74161
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 8656424 and ends at 8661877 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPDYE4   35463
Cards
Entrez_Gene (NCBI)SPDYE4  388333  speedy/RINGO cell cycle regulator family member E4
Aliases
GeneCards (Weizmann)SPDYE4
Ensembl hg19 (Hinxton)ENSG00000183318 [Gene_View]  chr17:8656424-8661877 [Contig_View]  SPDYE4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000183318 [Gene_View]  chr17:8656424-8661877 [Contig_View]  SPDYE4 [Vega]
ICGC DataPortalENSG00000183318
TCGA cBioPortalSPDYE4
AceView (NCBI)SPDYE4
Genatlas (Paris)SPDYE4
WikiGenes388333
SOURCE (Princeton)SPDYE4
Genetics Home Reference (NIH)SPDYE4
Genomic and cartography
GoldenPath hg19 (UCSC)SPDYE4  -     chr17:8656424-8661877 -  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPDYE4  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblSPDYE4 - 17p13.1 [CytoView hg19]  SPDYE4 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBISPDYE4 [Mapview hg19]  SPDYE4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC146949 BC146966 BC171861
RefSeq transcript (Entrez)NM_001128076
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)SPDYE4
Cluster EST : UnigeneHs.368429 [ NCBI ]
CGAP (NCI)Hs.368429
Alternative Splicing GalleryENSG00000183318
Gene ExpressionSPDYE4 [ NCBI-GEO ]   SPDYE4 [ EBI - ARRAY_EXPRESS ]   SPDYE4 [ SEEK ]   SPDYE4 [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYE4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388333
GTEX Portal (Tissue expression)SPDYE4
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NLX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NLX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NLX3
Splice isoforms : SwissVarA6NLX3
PhosPhoSitePlusA6NLX3
Domains : Interpro (EBI)Cell_cycle_regulatory_Spy1   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYE4
DMDM Disease mutations388333
Blocks (Seattle)SPDYE4
SuperfamilyA6NLX3
Human Protein AtlasENSG00000183318
Peptide AtlasA6NLX3
IPIIPI00373871   
Protein Interaction databases
DIP (DOE-UCLA)A6NLX3
IntAct (EBI)A6NLX3
FunCoupENSG00000183318
BioGRIDSPDYE4
STRING (EMBL)SPDYE4
ZODIACSPDYE4
Ontologies - Pathways
QuickGOA6NLX3
Ontology : AmiGOprotein kinase binding  regulation of protein kinase activity  
Ontology : EGO-EBIprotein kinase binding  regulation of protein kinase activity  
NDEx NetworkSPDYE4
Atlas of Cancer Signalling NetworkSPDYE4
Wikipedia pathwaysSPDYE4
Orthology - Evolution
OrthoDB388333
GeneTree (enSembl)ENSG00000183318
Phylogenetic Trees/Animal Genes : TreeFamSPDYE4
HOVERGENA6NLX3
HOGENOMA6NLX3
Homologs : HomoloGeneSPDYE4
Homology/Alignments : Family Browser (UCSC)SPDYE4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYE4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYE4
dbVarSPDYE4
ClinVarSPDYE4
1000_GenomesSPDYE4 
Exome Variant ServerSPDYE4
ExAC (Exome Aggregation Consortium)SPDYE4 (select the gene name)
Genetic variants : HAPMAP388333
Genomic Variants (DGV)SPDYE4 [DGVbeta]
DECIPHER (Syndromes)17:8656424-8661877  ENSG00000183318
CONAN: Copy Number AnalysisSPDYE4 
Mutations
ICGC Data PortalSPDYE4 
TCGA Data PortalSPDYE4 
Broad Tumor PortalSPDYE4
OASIS PortalSPDYE4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPDYE4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPDYE4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPDYE4
DgiDB (Drug Gene Interaction Database)SPDYE4
DoCM (Curated mutations)SPDYE4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPDYE4 (select a term)
intoGenSPDYE4
Cancer3DSPDYE4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPDYE4
Genetic Testing Registry SPDYE4
NextProtA6NLX3 [Medical]
TSGene388333
GENETestsSPDYE4
Huge Navigator SPDYE4 [HugePedia]
snp3D : Map Gene to Disease388333
BioCentury BCIQSPDYE4
ClinGenSPDYE4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388333
Chemical/Pharm GKB GenePA164726235
Clinical trialSPDYE4
Miscellaneous
canSAR (ICR)SPDYE4 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPDYE4
EVEXSPDYE4
GoPubMedSPDYE4
iHOPSPDYE4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:27 CET 2017

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