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SPDYE5 (speedy/RINGO cell cycle regulator family member E5)

Identity

Alias_namesspeedy homolog E5 (Xenopus laevis)
Other alias-
HGNC (Hugo) SPDYE5
LocusID (NCBI) 442590
Atlas_Id 74162
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 75493627 and ends at 75504304 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPDYE5   35464
Cards
Entrez_Gene (NCBI)SPDYE5  442590  speedy/RINGO cell cycle regulator family member E5
Aliases
GeneCards (Weizmann)SPDYE5
Ensembl hg19 (Hinxton)ENSG00000170092 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170092 [Gene_View]  chr7:75493627-75504304 [Contig_View]  SPDYE5 [Vega]
ICGC DataPortalENSG00000170092
TCGA cBioPortalSPDYE5
AceView (NCBI)SPDYE5
Genatlas (Paris)SPDYE5
WikiGenes442590
SOURCE (Princeton)SPDYE5
Genetics Home Reference (NIH)SPDYE5
Genomic and cartography
GoldenPath hg38 (UCSC)SPDYE5  -     chr7:75493627-75504304 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPDYE5  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblSPDYE5 - 7q11.23 [CytoView hg19]  SPDYE5 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBISPDYE5 [Mapview hg19]  SPDYE5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001099435 NM_001306141
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPDYE5
Cluster EST : UnigeneHs.632298 [ NCBI ]
CGAP (NCI)Hs.632298
Alternative Splicing GalleryENSG00000170092
Gene ExpressionSPDYE5 [ NCBI-GEO ]   SPDYE5 [ EBI - ARRAY_EXPRESS ]   SPDYE5 [ SEEK ]   SPDYE5 [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYE5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442590
GTEX Portal (Tissue expression)SPDYE5
Human Protein AtlasENSG00000170092-SPDYE5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NIY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NIY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NIY4
Splice isoforms : SwissVarA6NIY4
PhosPhoSitePlusA6NIY4
Domains : Interpro (EBI)Speedy   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYE5
DMDM Disease mutations442590
Blocks (Seattle)SPDYE5
SuperfamilyA6NIY4
Human Protein Atlas [tissue]ENSG00000170092-SPDYE5 [tissue]
Peptide AtlasA6NIY4
IPIIPI00455003   
Protein Interaction databases
DIP (DOE-UCLA)A6NIY4
IntAct (EBI)A6NIY4
FunCoupENSG00000170092
BioGRIDSPDYE5
STRING (EMBL)SPDYE5
ZODIACSPDYE5
Ontologies - Pathways
QuickGOA6NIY4
Ontology : AmiGOprotein kinase binding  regulation of protein kinase activity  
Ontology : EGO-EBIprotein kinase binding  regulation of protein kinase activity  
NDEx NetworkSPDYE5
Atlas of Cancer Signalling NetworkSPDYE5
Wikipedia pathwaysSPDYE5
Orthology - Evolution
OrthoDB442590
GeneTree (enSembl)ENSG00000170092
Phylogenetic Trees/Animal Genes : TreeFamSPDYE5
HOVERGENA6NIY4
HOGENOMA6NIY4
Homologs : HomoloGeneSPDYE5
Homology/Alignments : Family Browser (UCSC)SPDYE5
Gene fusions - Rearrangements
Fusion: Tumor Portal SPDYE5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYE5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYE5
dbVarSPDYE5
ClinVarSPDYE5
1000_GenomesSPDYE5 
Exome Variant ServerSPDYE5
ExAC (Exome Aggregation Consortium)ENSG00000170092
GNOMAD BrowserENSG00000170092
Genetic variants : HAPMAP442590
Genomic Variants (DGV)SPDYE5 [DGVbeta]
DECIPHERSPDYE5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPDYE5 
Mutations
ICGC Data PortalSPDYE5 
TCGA Data PortalSPDYE5 
Broad Tumor PortalSPDYE5
OASIS PortalSPDYE5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPDYE5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPDYE5
DgiDB (Drug Gene Interaction Database)SPDYE5
DoCM (Curated mutations)SPDYE5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPDYE5 (select a term)
html#intoGen TARGET=intoGen>intoGenSPDYE5
Cancer3DSPDYE5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPDYE5
Genetic Testing Registry SPDYE5
NextProtA6NIY4 [Medical]
TSGene442590
GENETestsSPDYE5
Target ValidationSPDYE5
Huge Navigator SPDYE5 [HugePedia]
snp3D : Map Gene to Disease442590
BioCentury BCIQSPDYE5
ClinGenSPDYE5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442590
Chemical/Pharm GKB GenePA164726251
Clinical trialSPDYE5
Miscellaneous
canSAR (ICR)SPDYE5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPDYE5
EVEXSPDYE5
GoPubMedSPDYE5
iHOPSPDYE5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:30:47 CET 2017

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