Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPDYE6 (speedy/RINGO cell cycle regulator family member E6)

Identity

Alias_namesspeedy homolog E6 (Xenopus laevis)
Other alias-
HGNC (Hugo) SPDYE6
LocusID (NCBI) 729597
Atlas_Id 74163
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 102345752 and ends at 102356444 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPDYE6   35465
Cards
Entrez_Gene (NCBI)SPDYE6  729597  speedy/RINGO cell cycle regulator family member E6
Aliases
GeneCards (Weizmann)SPDYE6
Ensembl hg19 (Hinxton)ENSG00000260097 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260097 [Gene_View]  chr7:102345752-102356444 [Contig_View]  SPDYE6 [Vega]
ICGC DataPortalENSG00000260097
TCGA cBioPortalSPDYE6
AceView (NCBI)SPDYE6
Genatlas (Paris)SPDYE6
WikiGenes729597
SOURCE (Princeton)SPDYE6
Genetics Home Reference (NIH)SPDYE6
Genomic and cartography
GoldenPath hg38 (UCSC)SPDYE6  -     chr7:102345752-102356444 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPDYE6  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblSPDYE6 - 7q22.1 [CytoView hg19]  SPDYE6 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBISPDYE6 [Mapview hg19]  SPDYE6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001146210
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPDYE6
Alternative Splicing GalleryENSG00000260097
Gene ExpressionSPDYE6 [ NCBI-GEO ]   SPDYE6 [ EBI - ARRAY_EXPRESS ]   SPDYE6 [ SEEK ]   SPDYE6 [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYE6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729597
GTEX Portal (Tissue expression)SPDYE6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CI01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CI01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CI01
Splice isoforms : SwissVarP0CI01
PhosPhoSitePlusP0CI01
Domains : Interpro (EBI)Speedy   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYE6
DMDM Disease mutations729597
Blocks (Seattle)SPDYE6
SuperfamilyP0CI01
Human Protein AtlasENSG00000260097
Peptide AtlasP0CI01
IPIIPI00969568   
Protein Interaction databases
DIP (DOE-UCLA)P0CI01
IntAct (EBI)P0CI01
FunCoupENSG00000260097
BioGRIDSPDYE6
STRING (EMBL)SPDYE6
ZODIACSPDYE6
Ontologies - Pathways
QuickGOP0CI01
Ontology : AmiGOprotein kinase binding  regulation of protein kinase activity  
Ontology : EGO-EBIprotein kinase binding  regulation of protein kinase activity  
NDEx NetworkSPDYE6
Atlas of Cancer Signalling NetworkSPDYE6
Wikipedia pathwaysSPDYE6
Orthology - Evolution
OrthoDB729597
GeneTree (enSembl)ENSG00000260097
Phylogenetic Trees/Animal Genes : TreeFamSPDYE6
HOVERGENP0CI01
HOGENOMP0CI01
Homologs : HomoloGeneSPDYE6
Homology/Alignments : Family Browser (UCSC)SPDYE6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYE6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYE6
dbVarSPDYE6
ClinVarSPDYE6
1000_GenomesSPDYE6 
Exome Variant ServerSPDYE6
ExAC (Exome Aggregation Consortium)SPDYE6 (select the gene name)
Genetic variants : HAPMAP729597
Genomic Variants (DGV)SPDYE6 [DGVbeta]
DECIPHERSPDYE6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPDYE6 
Mutations
ICGC Data PortalSPDYE6 
TCGA Data PortalSPDYE6 
Broad Tumor PortalSPDYE6
OASIS PortalSPDYE6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPDYE6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPDYE6
DgiDB (Drug Gene Interaction Database)SPDYE6
DoCM (Curated mutations)SPDYE6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPDYE6 (select a term)
intoGenSPDYE6
Cancer3DSPDYE6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPDYE6
Genetic Testing Registry SPDYE6
NextProtP0CI01 [Medical]
TSGene729597
GENETestsSPDYE6
Huge Navigator SPDYE6 [HugePedia]
snp3D : Map Gene to Disease729597
BioCentury BCIQSPDYE6
ClinGenSPDYE6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729597
Chemical/Pharm GKB GenePA164726272
Clinical trialSPDYE6
Miscellaneous
canSAR (ICR)SPDYE6 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPDYE6
EVEXSPDYE6
GoPubMedSPDYE6
iHOPSPDYE6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:56:24 CEST 2017

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