Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPDYE6 (speedy/RINGO cell cycle regulator family member E6)

Identity

Alias (NCBI)-
HGNC (Hugo) SPDYE6
HGNC Previous namespeedy homolog E6 (Xenopus laevis)
LocusID (NCBI) 729597
Atlas_Id 74163
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 102345746 and ends at 102356444 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPDYE6   35465
Cards
Entrez_Gene (NCBI)SPDYE6    speedy/RINGO cell cycle regulator family member E6
Aliases
GeneCards (Weizmann)SPDYE6
Ensembl hg19 (Hinxton)ENSG00000260097 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260097 [Gene_View]  ENSG00000260097 [Sequence]  chr7:102345746-102356444 [Contig_View]  SPDYE6 [Vega]
ICGC DataPortalENSG00000260097
TCGA cBioPortalSPDYE6
AceView (NCBI)SPDYE6
Genatlas (Paris)SPDYE6
SOURCE (Princeton)SPDYE6
Genetics Home Reference (NIH)SPDYE6
Genomic and cartography
GoldenPath hg38 (UCSC)SPDYE6  -     chr7:102345746-102356444 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPDYE6  -     7q22.1   [Description]    (hg19-Feb_2009)
GoldenPathSPDYE6 - 7q22.1 [CytoView hg19]  SPDYE6 - 7q22.1 [CytoView hg38]
ImmunoBaseENSG00000260097
Genome Data Viewer NCBISPDYE6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)HY053642
RefSeq transcript (Entrez)NM_001146210
Consensus coding sequences : CCDS (NCBI)SPDYE6
Gene ExpressionSPDYE6 [ NCBI-GEO ]   SPDYE6 [ EBI - ARRAY_EXPRESS ]   SPDYE6 [ SEEK ]   SPDYE6 [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYE6 [ Firebrowse - Broad ]
GenevisibleExpression of SPDYE6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729597
GTEX Portal (Tissue expression)SPDYE6
Human Protein AtlasENSG00000260097-SPDYE6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CI01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CI01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CI01
PhosPhoSitePlusP0CI01
Domains : Interpro (EBI)Speedy   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYE6
SuperfamilyP0CI01
AlphaFold pdb e-kbP0CI01   
Human Protein Atlas [tissue]ENSG00000260097-SPDYE6 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P0CI01
IntAct (EBI)P0CI01
BioGRIDSPDYE6
STRING (EMBL)SPDYE6
ZODIACSPDYE6
Ontologies - Pathways
QuickGOP0CI01
Ontology : AmiGOprotein binding  protein kinase binding  
Ontology : EGO-EBIprotein binding  protein kinase binding  
NDEx NetworkSPDYE6
Atlas of Cancer Signalling NetworkSPDYE6
Wikipedia pathwaysSPDYE6
Orthology - Evolution
OrthoDB729597
GeneTree (enSembl)ENSG00000260097
Phylogenetic Trees/Animal Genes : TreeFamSPDYE6
Homologs : HomoloGeneSPDYE6
Homology/Alignments : Family Browser (UCSC)SPDYE6
Gene fusions - Rearrangements
Fusion : QuiverSPDYE6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYE6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYE6
dbVarSPDYE6
ClinVarSPDYE6
MonarchSPDYE6
1000_GenomesSPDYE6 
Exome Variant ServerSPDYE6
GNOMAD BrowserENSG00000260097
Varsome BrowserSPDYE6
ACMGSPDYE6 variants
VarityP0CI01
Genomic Variants (DGV)SPDYE6 [DGVbeta]
DECIPHERSPDYE6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPDYE6 
Mutations
ICGC Data PortalSPDYE6 
TCGA Data PortalSPDYE6 
Broad Tumor PortalSPDYE6
OASIS PortalSPDYE6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPDYE6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPDYE6
Mutations and Diseases : HGMDSPDYE6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPDYE6
DgiDB (Drug Gene Interaction Database)SPDYE6
DoCM (Curated mutations)SPDYE6
CIViC (Clinical Interpretations of Variants in Cancer)SPDYE6
Cancer3DSPDYE6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPDYE6
MedgenSPDYE6
Genetic Testing Registry SPDYE6
NextProtP0CI01 [Medical]
GENETestsSPDYE6
Target ValidationSPDYE6
Huge Navigator SPDYE6 [HugePedia]
ClinGenSPDYE6
Clinical trials, drugs, therapy
MyCancerGenomeSPDYE6
Protein Interactions : CTDSPDYE6
Pharm GKB GenePA164726272
PharosP0CI01
Clinical trialSPDYE6
Miscellaneous
canSAR (ICR)SPDYE6
HarmonizomeSPDYE6
DataMed IndexSPDYE6
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPDYE6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:23:59 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.