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SPDYE7P (speedy/RINGO cell cycle regulator family member E7, pseudogene)

Identity

Alias_namesspeedy homolog E7 (Xenopus laevis), pseudogene
Other alias-
HGNC (Hugo) SPDYE7P
LocusID (NCBI) 441251
Atlas_Id 74164
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 72862757 and ends at 72869091 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPDYE7P   35466
Cards
Entrez_Gene (NCBI)SPDYE7P  441251  speedy/RINGO cell cycle regulator family member E7, pseudogene
Aliases
GeneCards (Weizmann)SPDYE7P
Ensembl hg19 (Hinxton)ENSG00000179994 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179994 [Gene_View]  chr7:72862757-72869091 [Contig_View]  SPDYE7P [Vega]
ICGC DataPortalENSG00000179994
TCGA cBioPortalSPDYE7P
AceView (NCBI)SPDYE7P
Genatlas (Paris)SPDYE7P
WikiGenes441251
SOURCE (Princeton)SPDYE7P
Genetics Home Reference (NIH)SPDYE7P
Genomic and cartography
GoldenPath hg38 (UCSC)SPDYE7P  -     chr7:72862757-72869091 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPDYE7P  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblSPDYE7P - 7q11.23 [CytoView hg19]  SPDYE7P - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBISPDYE7P [Mapview hg19]  SPDYE7P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC100974
RefSeq transcript (Entrez)NM_001034844
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPDYE7P
Cluster EST : UnigeneHs.591819 [ NCBI ]
CGAP (NCI)Hs.591819
Alternative Splicing GalleryENSG00000179994
Gene ExpressionSPDYE7P [ NCBI-GEO ]   SPDYE7P [ EBI - ARRAY_EXPRESS ]   SPDYE7P [ SEEK ]   SPDYE7P [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYE7P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441251
GTEX Portal (Tissue expression)SPDYE7P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ495Y7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ495Y7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ495Y7
Splice isoforms : SwissVarQ495Y7
PhosPhoSitePlusQ495Y7
Domains : Interpro (EBI)Speedy   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYE7P
DMDM Disease mutations441251
Blocks (Seattle)SPDYE7P
SuperfamilyQ495Y7
Human Protein AtlasENSG00000179994
Peptide AtlasQ495Y7
IPIIPI00654761   
Protein Interaction databases
DIP (DOE-UCLA)Q495Y7
IntAct (EBI)Q495Y7
FunCoupENSG00000179994
BioGRIDSPDYE7P
STRING (EMBL)SPDYE7P
ZODIACSPDYE7P
Ontologies - Pathways
QuickGOQ495Y7
Ontology : AmiGOprotein kinase binding  regulation of protein kinase activity  
Ontology : EGO-EBIprotein kinase binding  regulation of protein kinase activity  
NDEx NetworkSPDYE7P
Atlas of Cancer Signalling NetworkSPDYE7P
Wikipedia pathwaysSPDYE7P
Orthology - Evolution
OrthoDB441251
GeneTree (enSembl)ENSG00000179994
Phylogenetic Trees/Animal Genes : TreeFamSPDYE7P
HOVERGENQ495Y7
HOGENOMQ495Y7
Homologs : HomoloGeneSPDYE7P
Homology/Alignments : Family Browser (UCSC)SPDYE7P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYE7P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYE7P
dbVarSPDYE7P
ClinVarSPDYE7P
1000_GenomesSPDYE7P 
Exome Variant ServerSPDYE7P
ExAC (Exome Aggregation Consortium)SPDYE7P (select the gene name)
Genetic variants : HAPMAP441251
Genomic Variants (DGV)SPDYE7P [DGVbeta]
DECIPHERSPDYE7P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPDYE7P 
Mutations
ICGC Data PortalSPDYE7P 
TCGA Data PortalSPDYE7P 
Broad Tumor PortalSPDYE7P
OASIS PortalSPDYE7P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPDYE7P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPDYE7P
DgiDB (Drug Gene Interaction Database)SPDYE7P
DoCM (Curated mutations)SPDYE7P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPDYE7P (select a term)
intoGenSPDYE7P
Cancer3DSPDYE7P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPDYE7P
Genetic Testing Registry SPDYE7P
NextProtQ495Y7 [Medical]
TSGene441251
GENETestsSPDYE7P
Huge Navigator SPDYE7P [HugePedia]
snp3D : Map Gene to Disease441251
BioCentury BCIQSPDYE7P
ClinGenSPDYE7P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441251
Clinical trialSPDYE7P
Miscellaneous
canSAR (ICR)SPDYE7P (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPDYE7P
EVEXSPDYE7P
GoPubMedSPDYE7P
iHOPSPDYE7P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:56:24 CEST 2017

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