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SPEM1 (spermatid maturation 1)

Identity

Alias_namesC17orf83
chromosome 17 open reading frame 83
Alias_symbol (synonym)FLJ40081
Other alias
HGNC (Hugo) SPEM1
LocusID (NCBI) 374768
Atlas_Id 74171
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7420360 and ends at 7421632 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPEM1   32429
Cards
Entrez_Gene (NCBI)SPEM1  374768  spermatid maturation 1
AliasesC17orf83
GeneCards (Weizmann)SPEM1
Ensembl hg19 (Hinxton)ENSG00000181323 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181323 [Gene_View]  chr17:7420360-7421632 [Contig_View]  SPEM1 [Vega]
ICGC DataPortalENSG00000181323
TCGA cBioPortalSPEM1
AceView (NCBI)SPEM1
Genatlas (Paris)SPEM1
WikiGenes374768
SOURCE (Princeton)SPEM1
Genetics Home Reference (NIH)SPEM1
Genomic and cartography
GoldenPath hg38 (UCSC)SPEM1  -     chr17:7420360-7421632 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPEM1  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblSPEM1 - 17p13.1 [CytoView hg19]  SPEM1 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBISPEM1 [Mapview hg19]  SPEM1 [Mapview hg38]
OMIM615116   
Gene and transcription
Genbank (Entrez)AK097400 BC033882
RefSeq transcript (Entrez)NM_199339
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPEM1
Cluster EST : UnigeneHs.710599 [ NCBI ]
CGAP (NCI)Hs.710599
Alternative Splicing GalleryENSG00000181323
Gene ExpressionSPEM1 [ NCBI-GEO ]   SPEM1 [ EBI - ARRAY_EXPRESS ]   SPEM1 [ SEEK ]   SPEM1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPEM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374768
GTEX Portal (Tissue expression)SPEM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4L4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4L4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4L4
Splice isoforms : SwissVarQ8N4L4
PhosPhoSitePlusQ8N4L4
Domains : Interpro (EBI)SPEM1_N   
Domain families : Pfam (Sanger)Spem1 (PF15670)   
Domain families : Pfam (NCBI)pfam15670   
Conserved Domain (NCBI)SPEM1
DMDM Disease mutations374768
Blocks (Seattle)SPEM1
SuperfamilyQ8N4L4
Human Protein AtlasENSG00000181323
Peptide AtlasQ8N4L4
HPRD14188
IPIIPI00161396   IPI00182435   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4L4
IntAct (EBI)Q8N4L4
FunCoupENSG00000181323
BioGRIDSPEM1
STRING (EMBL)SPEM1
ZODIACSPEM1
Ontologies - Pathways
QuickGOQ8N4L4
Ontology : AmiGOcytoplasm  sperm individualization  integral component of membrane  flagellated sperm motility  
Ontology : EGO-EBIcytoplasm  sperm individualization  integral component of membrane  flagellated sperm motility  
NDEx NetworkSPEM1
Atlas of Cancer Signalling NetworkSPEM1
Wikipedia pathwaysSPEM1
Orthology - Evolution
OrthoDB374768
GeneTree (enSembl)ENSG00000181323
Phylogenetic Trees/Animal Genes : TreeFamSPEM1
HOVERGENQ8N4L4
HOGENOMQ8N4L4
Homologs : HomoloGeneSPEM1
Homology/Alignments : Family Browser (UCSC)SPEM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPEM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPEM1
dbVarSPEM1
ClinVarSPEM1
1000_GenomesSPEM1 
Exome Variant ServerSPEM1
ExAC (Exome Aggregation Consortium)SPEM1 (select the gene name)
Genetic variants : HAPMAP374768
Genomic Variants (DGV)SPEM1 [DGVbeta]
DECIPHERSPEM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPEM1 
Mutations
ICGC Data PortalSPEM1 
TCGA Data PortalSPEM1 
Broad Tumor PortalSPEM1
OASIS PortalSPEM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPEM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPEM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPEM1
DgiDB (Drug Gene Interaction Database)SPEM1
DoCM (Curated mutations)SPEM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPEM1 (select a term)
intoGenSPEM1
Cancer3DSPEM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615116   
Orphanet
MedgenSPEM1
Genetic Testing Registry SPEM1
NextProtQ8N4L4 [Medical]
TSGene374768
GENETestsSPEM1
Target ValidationSPEM1
Huge Navigator SPEM1 [HugePedia]
snp3D : Map Gene to Disease374768
BioCentury BCIQSPEM1
ClinGenSPEM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374768
Chemical/Pharm GKB GenePA162404476
Clinical trialSPEM1
Miscellaneous
canSAR (ICR)SPEM1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPEM1
EVEXSPEM1
GoPubMedSPEM1
iHOPSPEM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:20 CEST 2017

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