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SPEM2 (SPEM family member 2)

Identity

Alias_namesC17orf74
chromosome 17 open reading frame 74
Other alias
HGNC (Hugo) SPEM2
LocusID (NCBI) 201243
Atlas_Id 79676
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7425616 and ends at 7427567 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SPEM2   27315
Cards
Entrez_Gene (NCBI)SPEM2  201243  SPEM family member 2
AliasesC17orf74
GeneCards (Weizmann)SPEM2
Ensembl hg19 (Hinxton)ENSG00000184560 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184560 [Gene_View]  chr17:7425616-7427567 [Contig_View]  SPEM2 [Vega]
ICGC DataPortalENSG00000184560
TCGA cBioPortalSPEM2
AceView (NCBI)SPEM2
Genatlas (Paris)SPEM2
WikiGenes201243
SOURCE (Princeton)SPEM2
Genetics Home Reference (NIH)SPEM2
Genomic and cartography
GoldenPath hg38 (UCSC)SPEM2  -     chr17:7425616-7427567 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPEM2  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblSPEM2 - 17p13.1 [CytoView hg19]  SPEM2 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBISPEM2 [Mapview hg19]  SPEM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC031286 BC044816 BC048010
RefSeq transcript (Entrez)NM_175734
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPEM2
Cluster EST : UnigeneHs.380704 [ NCBI ]
CGAP (NCI)Hs.380704
Alternative Splicing GalleryENSG00000184560
Gene ExpressionSPEM2 [ NCBI-GEO ]   SPEM2 [ EBI - ARRAY_EXPRESS ]   SPEM2 [ SEEK ]   SPEM2 [ MEM ]
Gene Expression Viewer (FireBrowse)SPEM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201243
GTEX Portal (Tissue expression)SPEM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0P670   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0P670  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0P670
Splice isoforms : SwissVarQ0P670
PhosPhoSitePlusQ0P670
Domains : Interpro (EBI)SPEM1_N   
Domain families : Pfam (Sanger)Spem1 (PF15670)   
Domain families : Pfam (NCBI)pfam15670   
Conserved Domain (NCBI)SPEM2
DMDM Disease mutations201243
Blocks (Seattle)SPEM2
SuperfamilyQ0P670
Human Protein AtlasENSG00000184560
Peptide AtlasQ0P670
IPIIPI00329357   
Protein Interaction databases
DIP (DOE-UCLA)Q0P670
IntAct (EBI)Q0P670
FunCoupENSG00000184560
BioGRIDSPEM2
STRING (EMBL)SPEM2
ZODIACSPEM2
Ontologies - Pathways
QuickGOQ0P670
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSPEM2
Atlas of Cancer Signalling NetworkSPEM2
Wikipedia pathwaysSPEM2
Orthology - Evolution
OrthoDB201243
GeneTree (enSembl)ENSG00000184560
Phylogenetic Trees/Animal Genes : TreeFamSPEM2
HOVERGENQ0P670
HOGENOMQ0P670
Homologs : HomoloGeneSPEM2
Homology/Alignments : Family Browser (UCSC)SPEM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPEM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPEM2
dbVarSPEM2
ClinVarSPEM2
1000_GenomesSPEM2 
Exome Variant ServerSPEM2
ExAC (Exome Aggregation Consortium)SPEM2 (select the gene name)
Genetic variants : HAPMAP201243
Genomic Variants (DGV)SPEM2 [DGVbeta]
DECIPHERSPEM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPEM2 
Mutations
ICGC Data PortalSPEM2 
TCGA Data PortalSPEM2 
Broad Tumor PortalSPEM2
OASIS PortalSPEM2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPEM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPEM2
DgiDB (Drug Gene Interaction Database)SPEM2
DoCM (Curated mutations)SPEM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPEM2 (select a term)
intoGenSPEM2
Cancer3DSPEM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPEM2
Genetic Testing Registry SPEM2
NextProtQ0P670 [Medical]
TSGene201243
GENETestsSPEM2
Target ValidationSPEM2
Huge Navigator SPEM2 [HugePedia]
snp3D : Map Gene to Disease201243
BioCentury BCIQSPEM2
ClinGenSPEM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201243
Chemical/Pharm GKB GenePA142672222
Clinical trialSPEM2
Miscellaneous
canSAR (ICR)SPEM2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPEM2
EVEXSPEM2
GoPubMedSPEM2
iHOPSPEM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:21 CEST 2017

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