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SPERT (spermatid associated)

Identity

Alias_symbol (synonym)NURIT
CBY2
Other alias
HGNC (Hugo) SPERT
LocusID (NCBI) 220082
Atlas_Id 74172
Location 13q14.13  [Link to chromosome band 13q14]
Location_base_pair Starts at 45702304 and ends at 45714559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPERT   30720
Cards
Entrez_Gene (NCBI)SPERT  220082  spermatid associated
AliasesCBY2; NURIT
GeneCards (Weizmann)SPERT
Ensembl hg19 (Hinxton)ENSG00000174015 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174015 [Gene_View]  chr13:45702304-45714559 [Contig_View]  SPERT [Vega]
ICGC DataPortalENSG00000174015
TCGA cBioPortalSPERT
AceView (NCBI)SPERT
Genatlas (Paris)SPERT
WikiGenes220082
SOURCE (Princeton)SPERT
Genetics Home Reference (NIH)SPERT
Genomic and cartography
GoldenPath hg38 (UCSC)SPERT  -     chr13:45702304-45714559 +  13q14.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPERT  -     13q14.13   [Description]    (hg19-Feb_2009)
EnsemblSPERT - 13q14.13 [CytoView hg19]  SPERT - 13q14.13 [CytoView hg38]
Mapping of homologs : NCBISPERT [Mapview hg19]  SPERT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093129 AK292350 BC027609 HM005495 HY007057
RefSeq transcript (Entrez)NM_001286341 NM_001286342 NM_152719
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPERT
Cluster EST : UnigeneHs.186363 [ NCBI ]
CGAP (NCI)Hs.186363
Alternative Splicing GalleryENSG00000174015
Gene ExpressionSPERT [ NCBI-GEO ]   SPERT [ EBI - ARRAY_EXPRESS ]   SPERT [ SEEK ]   SPERT [ MEM ]
Gene Expression Viewer (FireBrowse)SPERT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220082
GTEX Portal (Tissue expression)SPERT
Human Protein AtlasENSG00000174015-SPERT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA61
Splice isoforms : SwissVarQ8NA61
PhosPhoSitePlusQ8NA61
Domains : Interpro (EBI)Chibby_fam    SPERT   
Domain families : Pfam (Sanger)Chibby (PF14645)   
Domain families : Pfam (NCBI)pfam14645   
Conserved Domain (NCBI)SPERT
DMDM Disease mutations220082
Blocks (Seattle)SPERT
SuperfamilyQ8NA61
Human Protein Atlas [tissue]ENSG00000174015-SPERT [tissue]
Peptide AtlasQ8NA61
HPRD14856
IPIIPI00167913   IPI00641475   IPI00984932   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA61
IntAct (EBI)Q8NA61
FunCoupENSG00000174015
BioGRIDSPERT
STRING (EMBL)SPERT
ZODIACSPERT
Ontologies - Pathways
QuickGOQ8NA61
Ontology : AmiGOprotein binding  cytoplasmic vesicle  
Ontology : EGO-EBIprotein binding  cytoplasmic vesicle  
NDEx NetworkSPERT
Atlas of Cancer Signalling NetworkSPERT
Wikipedia pathwaysSPERT
Orthology - Evolution
OrthoDB220082
GeneTree (enSembl)ENSG00000174015
Phylogenetic Trees/Animal Genes : TreeFamSPERT
HOVERGENQ8NA61
HOGENOMQ8NA61
Homologs : HomoloGeneSPERT
Homology/Alignments : Family Browser (UCSC)SPERT
Gene fusions - Rearrangements
Tumor Fusion PortalSPERT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPERT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPERT
dbVarSPERT
ClinVarSPERT
1000_GenomesSPERT 
Exome Variant ServerSPERT
ExAC (Exome Aggregation Consortium)ENSG00000174015
GNOMAD BrowserENSG00000174015
Genetic variants : HAPMAP220082
Genomic Variants (DGV)SPERT [DGVbeta]
DECIPHERSPERT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPERT 
Mutations
ICGC Data PortalSPERT 
TCGA Data PortalSPERT 
Broad Tumor PortalSPERT
OASIS PortalSPERT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPERT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPERT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPERT
DgiDB (Drug Gene Interaction Database)SPERT
DoCM (Curated mutations)SPERT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPERT (select a term)
intoGenSPERT
Cancer3DSPERT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPERT
MedgenSPERT
Genetic Testing Registry SPERT
NextProtQ8NA61 [Medical]
TSGene220082
GENETestsSPERT
Target ValidationSPERT
Huge Navigator SPERT [HugePedia]
snp3D : Map Gene to Disease220082
BioCentury BCIQSPERT
ClinGenSPERT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220082
Chemical/Pharm GKB GenePA144596272
Clinical trialSPERT
Miscellaneous
canSAR (ICR)SPERT (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPERT
EVEXSPERT
GoPubMedSPERT
iHOPSPERT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:29:01 CET 2017

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