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SPESP1 (sperm equatorial segment protein 1)

Identity

Alias_symbol (synonym)SP-ESP
Other aliasESP
HGNC (Hugo) SPESP1
LocusID (NCBI) 246777
Atlas_Id 56073
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 68930500 and ends at 68946811 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GLCE (15q23) / SPESP1 (15q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPESP1   15570
Cards
Entrez_Gene (NCBI)SPESP1  246777  sperm equatorial segment protein 1
AliasesESP; SP-ESP
GeneCards (Weizmann)SPESP1
Ensembl hg19 (Hinxton)ENSG00000258484 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258484 [Gene_View]  chr15:68930500-68946811 [Contig_View]  SPESP1 [Vega]
ICGC DataPortalENSG00000258484
TCGA cBioPortalSPESP1
AceView (NCBI)SPESP1
Genatlas (Paris)SPESP1
WikiGenes246777
SOURCE (Princeton)SPESP1
Genetics Home Reference (NIH)SPESP1
Genomic and cartography
GoldenPath hg38 (UCSC)SPESP1  -     chr15:68930500-68946811 +  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPESP1  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblSPESP1 - 15q23 [CytoView hg19]  SPESP1 - 15q23 [CytoView hg38]
Mapping of homologs : NCBISPESP1 [Mapview hg19]  SPESP1 [Mapview hg38]
OMIM609399   
Gene and transcription
Genbank (Entrez)AF275321 AY358983 BC017998 BG720873 BM564110
RefSeq transcript (Entrez)NM_145658
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPESP1
Cluster EST : UnigeneHs.657932 [ NCBI ]
CGAP (NCI)Hs.657932
Alternative Splicing GalleryENSG00000258484
Gene ExpressionSPESP1 [ NCBI-GEO ]   SPESP1 [ EBI - ARRAY_EXPRESS ]   SPESP1 [ SEEK ]   SPESP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPESP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)246777
GTEX Portal (Tissue expression)SPESP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UW49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UW49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UW49
Splice isoforms : SwissVarQ6UW49
PhosPhoSitePlusQ6UW49
Domains : Interpro (EBI)Equatorial_segment   
Domain families : Pfam (Sanger)SPESP1 (PF15754)   
Domain families : Pfam (NCBI)pfam15754   
Conserved Domain (NCBI)SPESP1
DMDM Disease mutations246777
Blocks (Seattle)SPESP1
SuperfamilyQ6UW49
Human Protein AtlasENSG00000258484
Peptide AtlasQ6UW49
HPRD15436
IPIIPI00303075   IPI01014417   
Protein Interaction databases
DIP (DOE-UCLA)Q6UW49
IntAct (EBI)Q6UW49
FunCoupENSG00000258484
BioGRIDSPESP1
STRING (EMBL)SPESP1
ZODIACSPESP1
Ontologies - Pathways
QuickGOQ6UW49
Ontology : AmiGOacrosomal vesicle  multicellular organism development  acrosome reaction  fusion of sperm to egg plasma membrane  
Ontology : EGO-EBIacrosomal vesicle  multicellular organism development  acrosome reaction  fusion of sperm to egg plasma membrane  
NDEx NetworkSPESP1
Atlas of Cancer Signalling NetworkSPESP1
Wikipedia pathwaysSPESP1
Orthology - Evolution
OrthoDB246777
GeneTree (enSembl)ENSG00000258484
Phylogenetic Trees/Animal Genes : TreeFamSPESP1
HOVERGENQ6UW49
HOGENOMQ6UW49
Homologs : HomoloGeneSPESP1
Homology/Alignments : Family Browser (UCSC)SPESP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPESP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPESP1
dbVarSPESP1
ClinVarSPESP1
1000_GenomesSPESP1 
Exome Variant ServerSPESP1
ExAC (Exome Aggregation Consortium)SPESP1 (select the gene name)
Genetic variants : HAPMAP246777
Genomic Variants (DGV)SPESP1 [DGVbeta]
DECIPHERSPESP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPESP1 
Mutations
ICGC Data PortalSPESP1 
TCGA Data PortalSPESP1 
Broad Tumor PortalSPESP1
OASIS PortalSPESP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPESP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPESP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPESP1
DgiDB (Drug Gene Interaction Database)SPESP1
DoCM (Curated mutations)SPESP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPESP1 (select a term)
intoGenSPESP1
Cancer3DSPESP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609399   
Orphanet
MedgenSPESP1
Genetic Testing Registry SPESP1
NextProtQ6UW49 [Medical]
TSGene246777
GENETestsSPESP1
Target ValidationSPESP1
Huge Navigator SPESP1 [HugePedia]
snp3D : Map Gene to Disease246777
BioCentury BCIQSPESP1
ClinGenSPESP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD246777
Chemical/Pharm GKB GenePA37980
Clinical trialSPESP1
Miscellaneous
canSAR (ICR)SPESP1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPESP1
EVEXSPESP1
GoPubMedSPESP1
iHOPSPESP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:32:44 CEST 2017

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