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SPG20-AS1 (SPG20 antisense RNA 1)

Identity

Alias_namesC13orf43
SPG20OS
chromosome 13 open reading frame 43
SPG20 opposite strand
Other alias
HGNC (Hugo) SPG20-AS1
LocusID (NCBI) 100507135
Atlas_Id 74174
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 36346431 and ends at 36369735 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRPC4AP (20q11.22) / SPG20-AS1 (13q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPG20-AS1   39933
Cards
Entrez_Gene (NCBI)SPG20-AS1  100507135  SPG20 antisense RNA 1
AliasesC13orf43; SPG20OS
GeneCards (Weizmann)SPG20-AS1
Ensembl hg19 (Hinxton)ENSG00000120664 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120664 [Gene_View]  chr13:36346431-36369735 [Contig_View]  SPG20-AS1 [Vega]
ICGC DataPortalENSG00000120664
TCGA cBioPortalSPG20-AS1
AceView (NCBI)SPG20-AS1
Genatlas (Paris)SPG20-AS1
WikiGenes100507135
SOURCE (Princeton)SPG20-AS1
Genetics Home Reference (NIH)SPG20-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SPG20-AS1  -     chr13:36346431-36369735 +  13q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPG20-AS1  -     13q13.3   [Description]    (hg19-Feb_2009)
EnsemblSPG20-AS1 - 13q13.3 [CytoView hg19]  SPG20-AS1 - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBISPG20-AS1 [Mapview hg19]  SPG20-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW292824 BF732820 CD674079
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPG20-AS1
Cluster EST : UnigeneHs.631781 [ NCBI ]
CGAP (NCI)Hs.631781
Alternative Splicing GalleryENSG00000120664
Gene ExpressionSPG20-AS1 [ NCBI-GEO ]   SPG20-AS1 [ EBI - ARRAY_EXPRESS ]   SPG20-AS1 [ SEEK ]   SPG20-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPG20-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507135
GTEX Portal (Tissue expression)SPG20-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CW21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CW21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CW21
Splice isoforms : SwissVarP0CW21
PhosPhoSitePlusP0CW21
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPG20-AS1
DMDM Disease mutations100507135
Blocks (Seattle)SPG20-AS1
SuperfamilyP0CW21
Human Protein AtlasENSG00000120664
Peptide AtlasP0CW21
IPIIPI00022408   IPI00984353   
Protein Interaction databases
DIP (DOE-UCLA)P0CW21
IntAct (EBI)P0CW21
FunCoupENSG00000120664
BioGRIDSPG20-AS1
STRING (EMBL)SPG20-AS1
ZODIACSPG20-AS1
Ontologies - Pathways
QuickGOP0CW21
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPG20-AS1
Atlas of Cancer Signalling NetworkSPG20-AS1
Wikipedia pathwaysSPG20-AS1
Orthology - Evolution
OrthoDB100507135
GeneTree (enSembl)ENSG00000120664
Phylogenetic Trees/Animal Genes : TreeFamSPG20-AS1
HOVERGENP0CW21
HOGENOMP0CW21
Homologs : HomoloGeneSPG20-AS1
Homology/Alignments : Family Browser (UCSC)SPG20-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPG20-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPG20-AS1
dbVarSPG20-AS1
ClinVarSPG20-AS1
1000_GenomesSPG20-AS1 
Exome Variant ServerSPG20-AS1
ExAC (Exome Aggregation Consortium)SPG20-AS1 (select the gene name)
Genetic variants : HAPMAP100507135
Genomic Variants (DGV)SPG20-AS1 [DGVbeta]
DECIPHERSPG20-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPG20-AS1 
Mutations
ICGC Data PortalSPG20-AS1 
TCGA Data PortalSPG20-AS1 
Broad Tumor PortalSPG20-AS1
OASIS PortalSPG20-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPG20-AS1
BioMutasearch SPG20-AS1
DgiDB (Drug Gene Interaction Database)SPG20-AS1
DoCM (Curated mutations)SPG20-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPG20-AS1 (select a term)
intoGenSPG20-AS1
Cancer3DSPG20-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPG20-AS1
Genetic Testing Registry SPG20-AS1
NextProtP0CW21 [Medical]
TSGene100507135
GENETestsSPG20-AS1
Target ValidationSPG20-AS1
Huge Navigator SPG20-AS1 [HugePedia]
snp3D : Map Gene to Disease100507135
BioCentury BCIQSPG20-AS1
ClinGenSPG20-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507135
Clinical trialSPG20-AS1
Miscellaneous
canSAR (ICR)SPG20-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPG20-AS1
EVEXSPG20-AS1
GoPubMedSPG20-AS1
iHOPSPG20-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:21 CEST 2017

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