Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPHAR (S-phase response (cyclin related))

Identity

Other alias-
HGNC (Hugo) SPHAR
LocusID (NCBI) 10638
Atlas_Id 74175
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 229440129 and ends at 229441250 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPHAR   16957
Cards
Entrez_Gene (NCBI)SPHAR  10638  S-phase response (cyclin related)
Aliases
GeneCards (Weizmann)SPHAR
Ensembl hg19 (Hinxton) [Gene_View]  chr1:229440129-229441250 [Contig_View]  SPHAR [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:229440129-229441250 [Contig_View]  SPHAR [Vega]
TCGA cBioPortalSPHAR
AceView (NCBI)SPHAR
Genatlas (Paris)SPHAR
WikiGenes10638
SOURCE (Princeton)SPHAR
Genetics Home Reference (NIH)SPHAR
Genomic and cartography
GoldenPath hg19 (UCSC)SPHAR  -     chr1:229440129-229441250 +  1q42.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPHAR  -     1q42.13   [Description]    (hg38-Dec_2013)
EnsemblSPHAR - 1q42.13 [CytoView hg19]  SPHAR - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBISPHAR [Mapview hg19]  SPHAR [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI400109 BC070287 BC107681
RefSeq transcript (Entrez)NM_006542
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)SPHAR
Cluster EST : UnigeneHs.296169 [ NCBI ]
CGAP (NCI)Hs.296169
Gene ExpressionSPHAR [ NCBI-GEO ]   SPHAR [ EBI - ARRAY_EXPRESS ]   SPHAR [ SEEK ]   SPHAR [ MEM ]
Gene Expression Viewer (FireBrowse)SPHAR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10638
GTEX Portal (Tissue expression)SPHAR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15513   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15513  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15513
Splice isoforms : SwissVarQ15513
PhosPhoSitePlusQ15513
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPHAR
DMDM Disease mutations10638
Blocks (Seattle)SPHAR
SuperfamilyQ15513
Peptide AtlasQ15513
HPRD11597
IPIIPI00017990   
Protein Interaction databases
DIP (DOE-UCLA)Q15513
IntAct (EBI)Q15513
BioGRIDSPHAR
STRING (EMBL)SPHAR
ZODIACSPHAR
Ontologies - Pathways
QuickGOQ15513
Ontology : AmiGODNA replication  
Ontology : EGO-EBIDNA replication  
NDEx NetworkSPHAR
Atlas of Cancer Signalling NetworkSPHAR
Wikipedia pathwaysSPHAR
Orthology - Evolution
OrthoDB10638
Phylogenetic Trees/Animal Genes : TreeFamSPHAR
HOVERGENQ15513
HOGENOMQ15513
Homologs : HomoloGeneSPHAR
Homology/Alignments : Family Browser (UCSC)SPHAR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPHAR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPHAR
dbVarSPHAR
ClinVarSPHAR
1000_GenomesSPHAR 
Exome Variant ServerSPHAR
ExAC (Exome Aggregation Consortium)SPHAR (select the gene name)
Genetic variants : HAPMAP10638
Genomic Variants (DGV)SPHAR [DGVbeta]
DECIPHER (Syndromes)1:229440129-229441250  
CONAN: Copy Number AnalysisSPHAR 
Mutations
ICGC Data PortalSPHAR 
TCGA Data PortalSPHAR 
Broad Tumor PortalSPHAR
OASIS PortalSPHAR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPHAR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPHAR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPHAR
DgiDB (Drug Gene Interaction Database)SPHAR
DoCM (Curated mutations)SPHAR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPHAR (select a term)
intoGenSPHAR
Cancer3DSPHAR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPHAR
Genetic Testing Registry SPHAR
NextProtQ15513 [Medical]
TSGene10638
GENETestsSPHAR
Huge Navigator SPHAR [HugePedia]
snp3D : Map Gene to Disease10638
BioCentury BCIQSPHAR
ClinGenSPHAR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10638
Chemical/Pharm GKB GenePA145021510
Clinical trialSPHAR
Miscellaneous
canSAR (ICR)SPHAR (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPHAR
EVEXSPHAR
GoPubMedSPHAR
iHOPSPHAR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:46:29 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.