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SPHKAP (SPHK1 interactor, AKAP domain containing)

Identity

Alias_symbol (synonym)SKIP
Other alias
HGNC (Hugo) SPHKAP
LocusID (NCBI) 80309
Atlas_Id 53312
Location 2q36.3  [Link to chromosome band 2q36]
Location_base_pair Starts at 228844670 and ends at 229046361 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DIS3L2 (2q37.1) / SPHKAP (2q36.3)DIS3L2 2q37.1 / SPHKAP 2q36.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPHKAP   30619
Cards
Entrez_Gene (NCBI)SPHKAP  80309  SPHK1 interactor, AKAP domain containing
AliasesSKIP
GeneCards (Weizmann)SPHKAP
Ensembl hg19 (Hinxton)ENSG00000153820 [Gene_View]  chr2:228844670-229046361 [Contig_View]  SPHKAP [Vega]
Ensembl hg38 (Hinxton)ENSG00000153820 [Gene_View]  chr2:228844670-229046361 [Contig_View]  SPHKAP [Vega]
ICGC DataPortalENSG00000153820
TCGA cBioPortalSPHKAP
AceView (NCBI)SPHKAP
Genatlas (Paris)SPHKAP
WikiGenes80309
SOURCE (Princeton)SPHKAP
Genetics Home Reference (NIH)SPHKAP
Genomic and cartography
GoldenPath hg19 (UCSC)SPHKAP  -     chr2:228844670-229046361 -  2q36.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPHKAP  -     2q36.3   [Description]    (hg38-Dec_2013)
EnsemblSPHKAP - 2q36.3 [CytoView hg19]  SPHKAP - 2q36.3 [CytoView hg38]
Mapping of homologs : NCBISPHKAP [Mapview hg19]  SPHKAP [Mapview hg38]
OMIM611646   
Gene and transcription
Genbank (Entrez)AB051465 AK090876 AK095042 AK125481 AK127071
RefSeq transcript (Entrez)NM_001142644 NM_030623
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)SPHKAP
Cluster EST : UnigeneHs.436306 [ NCBI ]
CGAP (NCI)Hs.436306
Alternative Splicing GalleryENSG00000153820
Gene ExpressionSPHKAP [ NCBI-GEO ]   SPHKAP [ EBI - ARRAY_EXPRESS ]   SPHKAP [ SEEK ]   SPHKAP [ MEM ]
Gene Expression Viewer (FireBrowse)SPHKAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80309
GTEX Portal (Tissue expression)SPHKAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M3C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M3C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M3C7
Splice isoforms : SwissVarQ2M3C7
PhosPhoSitePlusQ2M3C7
Domains : Interpro (EBI)AKAP_110_C    SPHK1-interactor_AKAP_110   
Domain families : Pfam (Sanger)AKAP_110 (PF05716)   
Domain families : Pfam (NCBI)pfam05716   
Conserved Domain (NCBI)SPHKAP
DMDM Disease mutations80309
Blocks (Seattle)SPHKAP
SuperfamilyQ2M3C7
Human Protein AtlasENSG00000153820
Peptide AtlasQ2M3C7
HPRD18052
IPIIPI00304710   IPI00871508   
Protein Interaction databases
DIP (DOE-UCLA)Q2M3C7
IntAct (EBI)Q2M3C7
FunCoupENSG00000153820
BioGRIDSPHKAP
STRING (EMBL)SPHKAP
ZODIACSPHKAP
Ontologies - Pathways
QuickGOQ2M3C7
Ontology : AmiGOprotein binding  mitochondrion  regulation of protein kinase A signaling  protein kinase A binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  mitochondrion  regulation of protein kinase A signaling  protein kinase A binding  extracellular exosome  
Pathways : BIOCARTAPhospholipids as signalling intermediaries [Genes]   
NDEx NetworkSPHKAP
Atlas of Cancer Signalling NetworkSPHKAP
Wikipedia pathwaysSPHKAP
Orthology - Evolution
OrthoDB80309
GeneTree (enSembl)ENSG00000153820
Phylogenetic Trees/Animal Genes : TreeFamSPHKAP
HOVERGENQ2M3C7
HOGENOMQ2M3C7
Homologs : HomoloGeneSPHKAP
Homology/Alignments : Family Browser (UCSC)SPHKAP
Gene fusions - Rearrangements
Fusion : MitelmanDIS3L2/SPHKAP [2q37.1/2q36.3]  [t(2;2)(q36;q37)]  
Fusion: TCGADIS3L2 2q37.1 SPHKAP 2q36.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPHKAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPHKAP
dbVarSPHKAP
ClinVarSPHKAP
1000_GenomesSPHKAP 
Exome Variant ServerSPHKAP
ExAC (Exome Aggregation Consortium)SPHKAP (select the gene name)
Genetic variants : HAPMAP80309
Genomic Variants (DGV)SPHKAP [DGVbeta]
DECIPHER (Syndromes)2:228844670-229046361  ENSG00000153820
CONAN: Copy Number AnalysisSPHKAP 
Mutations
ICGC Data PortalSPHKAP 
TCGA Data PortalSPHKAP 
Broad Tumor PortalSPHKAP
OASIS PortalSPHKAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPHKAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPHKAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPHKAP
DgiDB (Drug Gene Interaction Database)SPHKAP
DoCM (Curated mutations)SPHKAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPHKAP (select a term)
intoGenSPHKAP
Cancer3DSPHKAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611646   
Orphanet
MedgenSPHKAP
Genetic Testing Registry SPHKAP
NextProtQ2M3C7 [Medical]
TSGene80309
GENETestsSPHKAP
Huge Navigator SPHKAP [HugePedia]
snp3D : Map Gene to Disease80309
BioCentury BCIQSPHKAP
ClinGenSPHKAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80309
Chemical/Pharm GKB GenePA162404477
Clinical trialSPHKAP
Miscellaneous
canSAR (ICR)SPHKAP (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPHKAP
EVEXSPHKAP
GoPubMedSPHKAP
iHOPSPHKAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:28:54 CET 2017

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