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SPIB (Spi-B transcription factor)

Identity

Alias_namesSpi-B transcription factor (Spi-1/PU.1 related)
Alias_symbol (synonym)SPI-B
Other alias
HGNC (Hugo) SPIB
LocusID (NCBI) 6689
Atlas_Id 42374
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50922195 and ends at 50934309 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IGH (14q32.33) / SPIB (19q13.33)IGHG1 (14q32.33) / SPIB (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPIB   11242
Cards
Entrez_Gene (NCBI)SPIB  6689  Spi-B transcription factor
AliasesSPI-B
GeneCards (Weizmann)SPIB
Ensembl hg19 (Hinxton)ENSG00000269404 [Gene_View]  chr19:50922195-50934309 [Contig_View]  SPIB [Vega]
Ensembl hg38 (Hinxton)ENSG00000269404 [Gene_View]  chr19:50922195-50934309 [Contig_View]  SPIB [Vega]
ICGC DataPortalENSG00000269404
TCGA cBioPortalSPIB
AceView (NCBI)SPIB
Genatlas (Paris)SPIB
WikiGenes6689
SOURCE (Princeton)SPIB
Genetics Home Reference (NIH)SPIB
Genomic and cartography
GoldenPath hg19 (UCSC)SPIB  -     chr19:50922195-50934309 +  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPIB  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblSPIB - 19q13.33 [CytoView hg19]  SPIB - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBISPIB [Mapview hg19]  SPIB [Mapview hg38]
OMIM606802   
Gene and transcription
Genbank (Entrez)AK025419 AK225225 AK225720 AK292644 AK300639
RefSeq transcript (Entrez)NM_001243998 NM_001243999 NM_001244000 NM_003121
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)SPIB
Cluster EST : UnigeneHs.437905 [ NCBI ]
CGAP (NCI)Hs.437905
Alternative Splicing GalleryENSG00000269404
Gene ExpressionSPIB [ NCBI-GEO ]   SPIB [ EBI - ARRAY_EXPRESS ]   SPIB [ SEEK ]   SPIB [ MEM ]
Gene Expression Viewer (FireBrowse)SPIB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6689
GTEX Portal (Tissue expression)SPIB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ01892   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ01892  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ01892
Splice isoforms : SwissVarQ01892
PhosPhoSitePlusQ01892
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domains : Interpro (EBI)Ets_dom    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Ets (PF00178)   
Domain families : Pfam (NCBI)pfam00178   
Domain families : Smart (EMBL)ETS (SM00413)  
Conserved Domain (NCBI)SPIB
DMDM Disease mutations6689
Blocks (Seattle)SPIB
SuperfamilyQ01892
Human Protein AtlasENSG00000269404
Peptide AtlasQ01892
IPIIPI00009934   IPI00215939   IPI00908964   
Protein Interaction databases
DIP (DOE-UCLA)Q01892
IntAct (EBI)Q01892
FunCoupENSG00000269404
BioGRIDSPIB
STRING (EMBL)SPIB
ZODIACSPIB
Ontologies - Pathways
QuickGOQ01892
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  cell differentiation  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  cell differentiation  sequence-specific DNA binding  
NDEx NetworkSPIB
Atlas of Cancer Signalling NetworkSPIB
Wikipedia pathwaysSPIB
Orthology - Evolution
OrthoDB6689
GeneTree (enSembl)ENSG00000269404
Phylogenetic Trees/Animal Genes : TreeFamSPIB
HOVERGENQ01892
HOGENOMQ01892
Homologs : HomoloGeneSPIB
Homology/Alignments : Family Browser (UCSC)SPIB
Gene fusions - Rearrangements
Fusion : MitelmanIGH/SPIB [14q32.33/19q13.33]  [t(14;19)(q32;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPIB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPIB
dbVarSPIB
ClinVarSPIB
1000_GenomesSPIB 
Exome Variant ServerSPIB
ExAC (Exome Aggregation Consortium)SPIB (select the gene name)
Genetic variants : HAPMAP6689
Genomic Variants (DGV)SPIB [DGVbeta]
DECIPHER (Syndromes)19:50922195-50934309  ENSG00000269404
CONAN: Copy Number AnalysisSPIB 
Mutations
ICGC Data PortalSPIB 
TCGA Data PortalSPIB 
Broad Tumor PortalSPIB
OASIS PortalSPIB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPIB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPIB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPIB
DgiDB (Drug Gene Interaction Database)SPIB
DoCM (Curated mutations)SPIB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPIB (select a term)
intoGenSPIB
Cancer3DSPIB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606802   
Orphanet874   
MedgenSPIB
Genetic Testing Registry SPIB
NextProtQ01892 [Medical]
TSGene6689
GENETestsSPIB
Huge Navigator SPIB [HugePedia]
snp3D : Map Gene to Disease6689
BioCentury BCIQSPIB
ClinGenSPIB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6689
Chemical/Pharm GKB GenePA36072
Clinical trialSPIB
Miscellaneous
canSAR (ICR)SPIB (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPIB
EVEXSPIB
GoPubMedSPIB
iHOPSPIB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:39 CEST 2017

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