Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SPIC (Spi-C transcription factor (Spi-1/PU.1 related))

Identity

Other namesSPI-C
HGNC (Hugo) SPIC
LocusID (NCBI) 121599
Location 12q23.2
Location_base_pair Starts at 101871335 and ends at 101880775 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SPIC   29549
Entrez_Gene (NCBI)SPIC  121599  Spi-C transcription factor (Spi-1/PU.1 related)
Cards
GeneCards (Weizmann)SPIC
Ensembl (Hinxton)ENSG00000166211 [Gene_View]  chr12:101871335-101880775 [Contig_View]  SPIC [Vega]
AceView (NCBI)SPIC
Genatlas (Paris)SPIC
SOURCE (Stanford)NM_152323
Genomic and cartography
GoldenPath (UCSC)SPIC  -  12q23.2   chr12:101871335-101880775 +  12q23.2   [Description]    (hg19-Feb_2009)
EnsemblSPIC - 12q23.2 [CytoView]
Mapping of homologs : NCBISPIC [Mapview]
OMIM612568   
Gene and transcription
Genbank (Entrez)AF518404 BC032317 EU446849
RefSeq transcript (SRS)NM_152323
RefSeq transcript (Entrez)NM_152323
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004078075
Consensus coding sequences : CCDS (NCBI)SPIC
Cluster EST : UnigeneHs.577097 [ SRS ] Hs.577097 [ NCBI ]
CGAP (NCI)Hs.577097
Alternative Splicing : Fast-db (Paris)GSHG0006938
Alternative Splicing GalleryENSG00000166211
Gene ExpressionSPIC [ NCBI-GEO ]   SPIC [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5J4 (SRS) Q8N5J4 (Uniprot)
NextProtQ8N5J4
With graphics : InterProQ8N5J4
Splice isoforms : SwissVarQ8N5J4(Swissvar)
Domaine pattern : Prosite (SRS)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domains : Interpro (SRS)Ets_dom    WHTH_DNA-bd_dom   
Domains : Interpro (EBI)Ets_dom    WHTH_DNA-bd_dom   
Related proteins : CluSTrQ8N5J4
Domain families : Pfam (SRS)Ets (PF00178)   
Domain families : Pfam (Sanger)Ets (PF00178)   
Domain families : Pfam (NCBI)pfam00178   
Domain families : Smart (EMBL)ETS (SM00413)  
DMDM121599
Blocks (Seattle)Q8N5J4
Human Protein AtlasENSG00000166211
HPRD15438
IPIIPI00166862   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5J4
IntAct (EBI)Q8N5J4
FunCoupENSG00000166211
REACTOMESPIC
Protein Interaction Database121599
BioGRIDSPIC
InParanoidQ8N5J4
Interologous Interaction database Q8N5J4
IntegromeDBSPIC
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SPIC
SNP (GeneSNP Utah)SPIC
SNP : HGBaseSPIC
Genetic variants : HAPMAPSPIC
Somatic Mutations in Cancer : COSMICSPIC 
CONAN: Copy Number AnalysisSPIC 
Mutations and Diseases : HGMDSPIC
OMIM612568   
GENETests612568   
Disease Genetic AssociationSPIC
Huge Navigator SPIC [HugePedia]  SPIC [HugeCancerGEM]
Genomic VariantsSPIC  SPIC [DGVbeta]
ClinVarSPIC
snp3D : Map Gene to Disease121599
General knowledge
Homologs : HomoloGeneSPIC
Homology/Alignments : Family Browser (UCSC)SPIC
Phylogenetic Trees/Animal Genes : TreeFamSPIC
Chemical/Protein Interactions : CTD121599
Chemical/Pharm GKB GenePA134897775
Clinical trialSPIC
Cancer Resource (Charite)ENSG00000166211
Ontology : AmiGOblastocyst development  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIblastocyst development  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  
Other databases
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
PubGeneSPIC
iHOPSPIC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:26:26 CEST 2013
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