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SPICE1 (spindle and centriole associated protein 1)

Identity

Alias_namesCCDC52
coiled-coil domain containing 52
Alias_symbol (synonym)SPICE
Other alias
HGNC (Hugo) SPICE1
LocusID (NCBI) 152185
Atlas_Id 74176
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 113442718 and ends at 113515187 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SPICE1 (3q13.2) / MORC1 (3q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPICE1   25083
Cards
Entrez_Gene (NCBI)SPICE1  152185  spindle and centriole associated protein 1
AliasesCCDC52; SPICE
GeneCards (Weizmann)SPICE1
Ensembl hg19 (Hinxton)ENSG00000163611 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163611 [Gene_View]  chr3:113442718-113515187 [Contig_View]  SPICE1 [Vega]
ICGC DataPortalENSG00000163611
TCGA cBioPortalSPICE1
AceView (NCBI)SPICE1
Genatlas (Paris)SPICE1
WikiGenes152185
SOURCE (Princeton)SPICE1
Genetics Home Reference (NIH)SPICE1
Genomic and cartography
GoldenPath hg38 (UCSC)SPICE1  -     chr3:113442718-113515187 -  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPICE1  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblSPICE1 - 3q13.2 [CytoView hg19]  SPICE1 - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBISPICE1 [Mapview hg19]  SPICE1 [Mapview hg38]
OMIM613447   
Gene and transcription
Genbank (Entrez)AK057966 AK126897 AK129575 AK296160 AL832148
RefSeq transcript (Entrez)NM_001331078 NM_001331079 NM_144718
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPICE1
Cluster EST : UnigeneHs.477144 [ NCBI ]
CGAP (NCI)Hs.477144
Alternative Splicing GalleryENSG00000163611
Gene ExpressionSPICE1 [ NCBI-GEO ]   SPICE1 [ EBI - ARRAY_EXPRESS ]   SPICE1 [ SEEK ]   SPICE1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPICE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152185
GTEX Portal (Tissue expression)SPICE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0Z3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0Z3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0Z3
Splice isoforms : SwissVarQ8N0Z3
PhosPhoSitePlusQ8N0Z3
Domains : Interpro (EBI)SPICE1   
Domain families : Pfam (Sanger)SPICE (PF15678)   
Domain families : Pfam (NCBI)pfam15678   
Conserved Domain (NCBI)SPICE1
DMDM Disease mutations152185
Blocks (Seattle)SPICE1
SuperfamilyQ8N0Z3
Human Protein AtlasENSG00000163611
Peptide AtlasQ8N0Z3
HPRD11242
IPIIPI00166121   IPI00945021   IPI00945396   IPI00946177   IPI01022139   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0Z3
IntAct (EBI)Q8N0Z3
FunCoupENSG00000163611
BioGRIDSPICE1
STRING (EMBL)SPICE1
ZODIACSPICE1
Ontologies - Pathways
QuickGOQ8N0Z3
Ontology : AmiGOprotein binding  centrosome  centriole  spindle  regulation of centriole replication  cell division  metaphase plate congression  mitotic spindle assembly  
Ontology : EGO-EBIprotein binding  centrosome  centriole  spindle  regulation of centriole replication  cell division  metaphase plate congression  mitotic spindle assembly  
NDEx NetworkSPICE1
Atlas of Cancer Signalling NetworkSPICE1
Wikipedia pathwaysSPICE1
Orthology - Evolution
OrthoDB152185
GeneTree (enSembl)ENSG00000163611
Phylogenetic Trees/Animal Genes : TreeFamSPICE1
HOVERGENQ8N0Z3
HOGENOMQ8N0Z3
Homologs : HomoloGeneSPICE1
Homology/Alignments : Family Browser (UCSC)SPICE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPICE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPICE1
dbVarSPICE1
ClinVarSPICE1
1000_GenomesSPICE1 
Exome Variant ServerSPICE1
ExAC (Exome Aggregation Consortium)SPICE1 (select the gene name)
Genetic variants : HAPMAP152185
Genomic Variants (DGV)SPICE1 [DGVbeta]
DECIPHERSPICE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPICE1 
Mutations
ICGC Data PortalSPICE1 
TCGA Data PortalSPICE1 
Broad Tumor PortalSPICE1
OASIS PortalSPICE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPICE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPICE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPICE1
DgiDB (Drug Gene Interaction Database)SPICE1
DoCM (Curated mutations)SPICE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPICE1 (select a term)
intoGenSPICE1
Cancer3DSPICE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613447   
Orphanet
MedgenSPICE1
Genetic Testing Registry SPICE1
NextProtQ8N0Z3 [Medical]
TSGene152185
GENETestsSPICE1
Target ValidationSPICE1
Huge Navigator SPICE1 [HugePedia]
snp3D : Map Gene to Disease152185
BioCentury BCIQSPICE1
ClinGenSPICE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152185
Chemical/Pharm GKB GenePA142672168
Clinical trialSPICE1
Miscellaneous
canSAR (ICR)SPICE1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPICE1
EVEXSPICE1
GoPubMedSPICE1
iHOPSPICE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:21 CEST 2017

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