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SPIN1 (spindlin 1)

Identity

Alias_namesSPIN
spindlin
Alias_symbol (synonym)TDRD24
Other alias
HGNC (Hugo) SPIN1
LocusID (NCBI) 10927
Atlas_Id 45690
Location 9q22.1  [Link to chromosome band 9q22]
Location_base_pair Starts at 91003297 and ends at 91093622 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BTC (4q13.3) / SPIN1 (9q22.1)DPYSL2 (8p21.2) / SPIN1 (9q22.1)RGS5 (1q23.3) / SPIN1 (9q22.1)
SPIN1 (9q22.1) / C16orf72 (16p13.2)SPIN1 (9q22.1) / SPIN1 (9q22.1)USP6NL (10p14) / SPIN1 (9q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPIN1   11243
Cards
Entrez_Gene (NCBI)SPIN1  10927  spindlin 1
AliasesSPIN; TDRD24
GeneCards (Weizmann)SPIN1
Ensembl hg19 (Hinxton)ENSG00000106723 [Gene_View]  chr9:91003297-91093622 [Contig_View]  SPIN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106723 [Gene_View]  chr9:91003297-91093622 [Contig_View]  SPIN1 [Vega]
ICGC DataPortalENSG00000106723
TCGA cBioPortalSPIN1
AceView (NCBI)SPIN1
Genatlas (Paris)SPIN1
WikiGenes10927
SOURCE (Princeton)SPIN1
Genetics Home Reference (NIH)SPIN1
Genomic and cartography
GoldenPath hg19 (UCSC)SPIN1  -     chr9:91003297-91093622 +  9q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPIN1  -     9q22.1   [Description]    (hg38-Dec_2013)
EnsemblSPIN1 - 9q22.1 [CytoView hg19]  SPIN1 - 9q22.1 [CytoView hg38]
Mapping of homologs : NCBISPIN1 [Mapview hg19]  SPIN1 [Mapview hg38]
OMIM609936   
Gene and transcription
Genbank (Entrez)AF087864 AF106682 AF317228 AJ420427 AK024590
RefSeq transcript (Entrez)NM_006717
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)SPIN1
Cluster EST : UnigeneHs.146804 [ NCBI ]
CGAP (NCI)Hs.146804
Alternative Splicing GalleryENSG00000106723
Gene ExpressionSPIN1 [ NCBI-GEO ]   SPIN1 [ EBI - ARRAY_EXPRESS ]   SPIN1 [ SEEK ]   SPIN1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPIN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10927
GTEX Portal (Tissue expression)SPIN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y657   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y657  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y657
Splice isoforms : SwissVarQ9Y657
PhosPhoSitePlusQ9Y657
Domains : Interpro (EBI)SPIN/Ssty    Spindlin-1/z   
Domain families : Pfam (Sanger)Spin-Ssty (PF02513)   
Domain families : Pfam (NCBI)pfam02513   
Conserved Domain (NCBI)SPIN1
DMDM Disease mutations10927
Blocks (Seattle)SPIN1
PDB (SRS)2NS2    4H75    4MZF    4MZG    4MZH   
PDB (PDBSum)2NS2    4H75    4MZF    4MZG    4MZH   
PDB (IMB)2NS2    4H75    4MZF    4MZG    4MZH   
PDB (RSDB)2NS2    4H75    4MZF    4MZG    4MZH   
Structural Biology KnowledgeBase2NS2    4H75    4MZF    4MZG    4MZH   
SCOP (Structural Classification of Proteins)2NS2    4H75    4MZF    4MZG    4MZH   
CATH (Classification of proteins structures)2NS2    4H75    4MZF    4MZG    4MZH   
SuperfamilyQ9Y657
Human Protein AtlasENSG00000106723
Peptide AtlasQ9Y657
HPRD18096
IPIIPI00550655   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y657
IntAct (EBI)Q9Y657
FunCoupENSG00000106723
BioGRIDSPIN1
STRING (EMBL)SPIN1
ZODIACSPIN1
Ontologies - Pathways
QuickGOQ9Y657
Ontology : AmiGOprotein binding  nucleus  nucleolus  spindle  multicellular organism development  gamete generation  rRNA transcription  Wnt signaling pathway  chromatin modification  positive regulation of Wnt signaling pathway  methylated histone binding  meiotic cell cycle  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  spindle  multicellular organism development  gamete generation  rRNA transcription  Wnt signaling pathway  chromatin modification  positive regulation of Wnt signaling pathway  methylated histone binding  meiotic cell cycle  
NDEx NetworkSPIN1
Atlas of Cancer Signalling NetworkSPIN1
Wikipedia pathwaysSPIN1
Orthology - Evolution
OrthoDB10927
GeneTree (enSembl)ENSG00000106723
Phylogenetic Trees/Animal Genes : TreeFamSPIN1
HOVERGENQ9Y657
HOGENOMQ9Y657
Homologs : HomoloGeneSPIN1
Homology/Alignments : Family Browser (UCSC)SPIN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPIN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPIN1
dbVarSPIN1
ClinVarSPIN1
1000_GenomesSPIN1 
Exome Variant ServerSPIN1
ExAC (Exome Aggregation Consortium)SPIN1 (select the gene name)
Genetic variants : HAPMAP10927
Genomic Variants (DGV)SPIN1 [DGVbeta]
DECIPHER (Syndromes)9:91003297-91093622  ENSG00000106723
CONAN: Copy Number AnalysisSPIN1 
Mutations
ICGC Data PortalSPIN1 
TCGA Data PortalSPIN1 
Broad Tumor PortalSPIN1
OASIS PortalSPIN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPIN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPIN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPIN1
DgiDB (Drug Gene Interaction Database)SPIN1
DoCM (Curated mutations)SPIN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPIN1 (select a term)
intoGenSPIN1
Cancer3DSPIN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609936   
Orphanet
MedgenSPIN1
Genetic Testing Registry SPIN1
NextProtQ9Y657 [Medical]
TSGene10927
GENETestsSPIN1
Huge Navigator SPIN1 [HugePedia]
snp3D : Map Gene to Disease10927
BioCentury BCIQSPIN1
ClinGenSPIN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10927
Chemical/Pharm GKB GenePA162404504
Clinical trialSPIN1
Miscellaneous
canSAR (ICR)SPIN1 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPIN1
EVEXSPIN1
GoPubMedSPIN1
iHOPSPIN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:39 CEST 2017

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