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SPIN2A (spindlin family, member 2A)

Identity

Alias_namesSPIN2
spindlin family, member 2
spindlin family, member 2A
Alias_symbol (synonym)DXF34
TDRD25
Other aliasdJ323P24.1
HGNC (Hugo) SPIN2A
LocusID (NCBI) 54466
Atlas_Id 74177
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 57162083 and ends at 57164058 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPIN2A   20694
Cards
Entrez_Gene (NCBI)SPIN2A  54466  spindlin family, member 2A
AliasesDXF34; SPIN2; dJ323P24.1
GeneCards (Weizmann)SPIN2A
Ensembl hg19 (Hinxton)ENSG00000147059 [Gene_View]  chrX:57162083-57164058 [Contig_View]  SPIN2A [Vega]
Ensembl hg38 (Hinxton)ENSG00000147059 [Gene_View]  chrX:57162083-57164058 [Contig_View]  SPIN2A [Vega]
ICGC DataPortalENSG00000147059
TCGA cBioPortalSPIN2A
AceView (NCBI)SPIN2A
Genatlas (Paris)SPIN2A
WikiGenes54466
SOURCE (Princeton)SPIN2A
Genetics Home Reference (NIH)SPIN2A
Genomic and cartography
GoldenPath hg19 (UCSC)SPIN2A  -     chrX:57162083-57164058 -  Xp11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPIN2A  -     Xp11.21   [Description]    (hg38-Dec_2013)
EnsemblSPIN2A - Xp11.21 [CytoView hg19]  SPIN2A - Xp11.21 [CytoView hg38]
Mapping of homologs : NCBISPIN2A [Mapview hg19]  SPIN2A [Mapview hg38]
OMIM300621   
Gene and transcription
Genbank (Entrez)BC071694 HQ447488 Y09858
RefSeq transcript (Entrez)NM_019003
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016252 NT_011630 NW_004929442
Consensus coding sequences : CCDS (NCBI)SPIN2A
Cluster EST : UnigeneHs.460725 [ NCBI ]
CGAP (NCI)Hs.460725
Alternative Splicing GalleryENSG00000147059
Gene ExpressionSPIN2A [ NCBI-GEO ]   SPIN2A [ EBI - ARRAY_EXPRESS ]   SPIN2A [ SEEK ]   SPIN2A [ MEM ]
Gene Expression Viewer (FireBrowse)SPIN2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54466
GTEX Portal (Tissue expression)SPIN2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99865   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99865  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99865
Splice isoforms : SwissVarQ99865
PhosPhoSitePlusQ99865
Domains : Interpro (EBI)SPIN-2    SPIN/Ssty   
Domain families : Pfam (Sanger)Spin-Ssty (PF02513)   
Domain families : Pfam (NCBI)pfam02513   
Conserved Domain (NCBI)SPIN2A
DMDM Disease mutations54466
Blocks (Seattle)SPIN2A
SuperfamilyQ99865
Human Protein AtlasENSG00000147059
Peptide AtlasQ99865
HPRD06725
IPIIPI00018510   
Protein Interaction databases
DIP (DOE-UCLA)Q99865
IntAct (EBI)Q99865
FunCoupENSG00000147059
BioGRIDSPIN2A
STRING (EMBL)SPIN2A
ZODIACSPIN2A
Ontologies - Pathways
QuickGOQ99865
Ontology : AmiGOmolecular_function  cellular_component  nucleus  cell cycle  gamete generation  regulation of cell cycle  
Ontology : EGO-EBImolecular_function  cellular_component  nucleus  cell cycle  gamete generation  regulation of cell cycle  
NDEx NetworkSPIN2A
Atlas of Cancer Signalling NetworkSPIN2A
Wikipedia pathwaysSPIN2A
Orthology - Evolution
OrthoDB54466
GeneTree (enSembl)ENSG00000147059
Phylogenetic Trees/Animal Genes : TreeFamSPIN2A
HOVERGENQ99865
HOGENOMQ99865
Homologs : HomoloGeneSPIN2A
Homology/Alignments : Family Browser (UCSC)SPIN2A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPIN2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPIN2A
dbVarSPIN2A
ClinVarSPIN2A
1000_GenomesSPIN2A 
Exome Variant ServerSPIN2A
ExAC (Exome Aggregation Consortium)SPIN2A (select the gene name)
Genetic variants : HAPMAP54466
Genomic Variants (DGV)SPIN2A [DGVbeta]
DECIPHER (Syndromes)X:57162083-57164058  ENSG00000147059
CONAN: Copy Number AnalysisSPIN2A 
Mutations
ICGC Data PortalSPIN2A 
TCGA Data PortalSPIN2A 
Broad Tumor PortalSPIN2A
OASIS PortalSPIN2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPIN2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPIN2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SPIN2A
DgiDB (Drug Gene Interaction Database)SPIN2A
DoCM (Curated mutations)SPIN2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPIN2A (select a term)
intoGenSPIN2A
Cancer3DSPIN2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300621   
Orphanet
MedgenSPIN2A
Genetic Testing Registry SPIN2A
NextProtQ99865 [Medical]
TSGene54466
GENETestsSPIN2A
Huge Navigator SPIN2A [HugePedia]
snp3D : Map Gene to Disease54466
BioCentury BCIQSPIN2A
ClinGenSPIN2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54466
Chemical/Pharm GKB GenePA162404521
Clinical trialSPIN2A
Miscellaneous
canSAR (ICR)SPIN2A (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPIN2A
EVEXSPIN2A
GoPubMedSPIN2A
iHOPSPIN2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:30 CET 2017

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