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SPIN2B (spindlin family member 2B)

Identity

Alias (NCBI)SPIN-2
SPIN-2B
SPIN2_duplicate
TDRD26
dJ323P24.2
HGNC (Hugo) SPIN2B
HGNC Alias symbSPIN-2
TDRD26
HGNC Previous namespindlin family, member 2B
LocusID (NCBI) 474343
Atlas_Id 74178
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 57119682 and ends at 57121548 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPIN2B   33147
Cards
Entrez_Gene (NCBI)SPIN2B    spindlin family member 2B
AliasesSPIN-2; SPIN-2B; SPIN2_duplicate; TDRD26; 
dJ323P24.2
GeneCards (Weizmann)SPIN2B
Ensembl hg19 (Hinxton)ENSG00000186787 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186787 [Gene_View]  ENSG00000186787 [Sequence]  chrX:57119682-57121548 [Contig_View]  SPIN2B [Vega]
ICGC DataPortalENSG00000186787
TCGA cBioPortalSPIN2B
AceView (NCBI)SPIN2B
Genatlas (Paris)SPIN2B
SOURCE (Princeton)SPIN2B
Genetics Home Reference (NIH)SPIN2B
Genomic and cartography
GoldenPath hg38 (UCSC)SPIN2B  -     chrX:57119682-57121548 -  Xp11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPIN2B  -     Xp11.21   [Description]    (hg19-Feb_2009)
GoldenPathSPIN2B - Xp11.21 [CytoView hg19]  SPIN2B - Xp11.21 [CytoView hg38]
ImmunoBaseENSG00000186787
Genome Data Viewer NCBISPIN2B [Mapview hg19]  
OMIM300517   
Gene and transcription
Genbank (Entrez)AA319190 AF356353 AK311172 BC000044 BC071974
RefSeq transcript (Entrez)NM_001006681 NM_001006682 NM_001006683 NM_001282461 NM_001282462
Consensus coding sequences : CCDS (NCBI)SPIN2B
Gene ExpressionSPIN2B [ NCBI-GEO ]   SPIN2B [ EBI - ARRAY_EXPRESS ]   SPIN2B [ SEEK ]   SPIN2B [ MEM ]
Gene Expression Viewer (FireBrowse)SPIN2B [ Firebrowse - Broad ]
GenevisibleExpression of SPIN2B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)474343
GTEX Portal (Tissue expression)SPIN2B
Human Protein AtlasENSG00000186787-SPIN2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BPZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BPZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BPZ2
PhosPhoSitePlusQ9BPZ2
Domains : Interpro (EBI)SPIN-2    SPIN/Ssty    SPIN/Ssty_sf   
Domain families : Pfam (Sanger)Spin-Ssty (PF02513)   
Domain families : Pfam (NCBI)pfam02513   
Conserved Domain (NCBI)SPIN2B
PDB (RSDB)5LUG   
PDB Europe5LUG   
PDB (PDBSum)5LUG   
PDB (IMB)5LUG   
Structural Biology KnowledgeBase5LUG   
SCOP (Structural Classification of Proteins)5LUG   
CATH (Classification of proteins structures)5LUG   
SuperfamilyQ9BPZ2
AlphaFold pdb e-kbQ9BPZ2   
Human Protein Atlas [tissue]ENSG00000186787-SPIN2B [tissue]
HPRD18662
Protein Interaction databases
DIP (DOE-UCLA)Q9BPZ2
IntAct (EBI)Q9BPZ2
BioGRIDSPIN2B
STRING (EMBL)SPIN2B
ZODIACSPIN2B
Ontologies - Pathways
QuickGOQ9BPZ2
Ontology : AmiGOprotein binding  nucleoplasm  nucleoplasm  cytosol  cytosol  regulation of transcription, DNA-templated  apoptotic process  cell cycle  gamete generation  methylated histone binding  methylated histone binding  regulation of cell cycle  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleoplasm  cytosol  cytosol  regulation of transcription, DNA-templated  apoptotic process  cell cycle  gamete generation  methylated histone binding  methylated histone binding  regulation of cell cycle  
NDEx NetworkSPIN2B
Atlas of Cancer Signalling NetworkSPIN2B
Wikipedia pathwaysSPIN2B
Orthology - Evolution
OrthoDB474343
GeneTree (enSembl)ENSG00000186787
Phylogenetic Trees/Animal Genes : TreeFamSPIN2B
Homologs : HomoloGeneSPIN2B
Homology/Alignments : Family Browser (UCSC)SPIN2B
Gene fusions - Rearrangements
Fusion : QuiverSPIN2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPIN2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPIN2B
dbVarSPIN2B
ClinVarSPIN2B
MonarchSPIN2B
1000_GenomesSPIN2B 
Exome Variant ServerSPIN2B
GNOMAD BrowserENSG00000186787
Varsome BrowserSPIN2B
ACMGSPIN2B variants
VarityQ9BPZ2
Genomic Variants (DGV)SPIN2B [DGVbeta]
DECIPHERSPIN2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPIN2B 
Mutations
ICGC Data PortalSPIN2B 
TCGA Data PortalSPIN2B 
Broad Tumor PortalSPIN2B
OASIS PortalSPIN2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPIN2B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPIN2B
Mutations and Diseases : HGMDSPIN2B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPIN2B
DgiDB (Drug Gene Interaction Database)SPIN2B
DoCM (Curated mutations)SPIN2B
CIViC (Clinical Interpretations of Variants in Cancer)SPIN2B
Cancer3DSPIN2B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300517   
Orphanet
DisGeNETSPIN2B
MedgenSPIN2B
Genetic Testing Registry SPIN2B
NextProtQ9BPZ2 [Medical]
GENETestsSPIN2B
Target ValidationSPIN2B
Huge Navigator SPIN2B [HugePedia]
ClinGenSPIN2B
Clinical trials, drugs, therapy
MyCancerGenomeSPIN2B
Protein Interactions : CTDSPIN2B
Pharm GKB GenePA162404530
PharosQ9BPZ2
Clinical trialSPIN2B
Miscellaneous
canSAR (ICR)SPIN2B
HarmonizomeSPIN2B
DataMed IndexSPIN2B
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPIN2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:01 CEST 2021

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