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SPIN2B (spindlin family member 2B)

Identity

Alias_namesspindlin family, member 2B
Alias_symbol (synonym)SPIN-2
TDRD26
Other aliasSPIN-2B
SPIN2_duplicate
dJ323P24.2
HGNC (Hugo) SPIN2B
LocusID (NCBI) 474343
Atlas_Id 74178
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 57119682 and ends at 57121546 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPIN2B   33147
Cards
Entrez_Gene (NCBI)SPIN2B  474343  spindlin family member 2B
AliasesSPIN-2; SPIN-2B; SPIN2_duplicate; TDRD26; 
dJ323P24.2
GeneCards (Weizmann)SPIN2B
Ensembl hg19 (Hinxton)ENSG00000186787 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186787 [Gene_View]  chrX:57119682-57121546 [Contig_View]  SPIN2B [Vega]
ICGC DataPortalENSG00000186787
TCGA cBioPortalSPIN2B
AceView (NCBI)SPIN2B
Genatlas (Paris)SPIN2B
WikiGenes474343
SOURCE (Princeton)SPIN2B
Genetics Home Reference (NIH)SPIN2B
Genomic and cartography
GoldenPath hg38 (UCSC)SPIN2B  -     chrX:57119682-57121546 -  Xp11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPIN2B  -     Xp11.21   [Description]    (hg19-Feb_2009)
EnsemblSPIN2B - Xp11.21 [CytoView hg19]  SPIN2B - Xp11.21 [CytoView hg38]
Mapping of homologs : NCBISPIN2B [Mapview hg19]  SPIN2B [Mapview hg38]
OMIM300517   
Gene and transcription
Genbank (Entrez)AA319190 AF356353 AK311172 BC000044 BC071974
RefSeq transcript (Entrez)NM_001006681 NM_001006682 NM_001006683 NM_001282461 NM_001282462
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPIN2B
Cluster EST : UnigeneHs.745094 [ NCBI ]
CGAP (NCI)Hs.745094
Alternative Splicing GalleryENSG00000186787
Gene ExpressionSPIN2B [ NCBI-GEO ]   SPIN2B [ EBI - ARRAY_EXPRESS ]   SPIN2B [ SEEK ]   SPIN2B [ MEM ]
Gene Expression Viewer (FireBrowse)SPIN2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)474343
GTEX Portal (Tissue expression)SPIN2B
Human Protein AtlasENSG00000186787-SPIN2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BPZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BPZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BPZ2
Splice isoforms : SwissVarQ9BPZ2
PhosPhoSitePlusQ9BPZ2
Domains : Interpro (EBI)SPIN-2    SPIN/Ssty   
Domain families : Pfam (Sanger)Spin-Ssty (PF02513)   
Domain families : Pfam (NCBI)pfam02513   
Conserved Domain (NCBI)SPIN2B
DMDM Disease mutations474343
Blocks (Seattle)SPIN2B
SuperfamilyQ9BPZ2
Human Protein Atlas [tissue]ENSG00000186787-SPIN2B [tissue]
Peptide AtlasQ9BPZ2
HPRD18662
IPIIPI00029084   IPI00640451   IPI00552752   
Protein Interaction databases
DIP (DOE-UCLA)Q9BPZ2
IntAct (EBI)Q9BPZ2
FunCoupENSG00000186787
BioGRIDSPIN2B
STRING (EMBL)SPIN2B
ZODIACSPIN2B
Ontologies - Pathways
QuickGOQ9BPZ2
Ontology : AmiGOnucleoplasm  cytosol  apoptotic process  cell cycle  gamete generation  regulation of cell cycle  
Ontology : EGO-EBInucleoplasm  cytosol  apoptotic process  cell cycle  gamete generation  regulation of cell cycle  
NDEx NetworkSPIN2B
Atlas of Cancer Signalling NetworkSPIN2B
Wikipedia pathwaysSPIN2B
Orthology - Evolution
OrthoDB474343
GeneTree (enSembl)ENSG00000186787
Phylogenetic Trees/Animal Genes : TreeFamSPIN2B
HOVERGENQ9BPZ2
HOGENOMQ9BPZ2
Homologs : HomoloGeneSPIN2B
Homology/Alignments : Family Browser (UCSC)SPIN2B
Gene fusions - Rearrangements
Fusion: Tumor Portal SPIN2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPIN2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPIN2B
dbVarSPIN2B
ClinVarSPIN2B
1000_GenomesSPIN2B 
Exome Variant ServerSPIN2B
ExAC (Exome Aggregation Consortium)ENSG00000186787
GNOMAD BrowserENSG00000186787
Genetic variants : HAPMAP474343
Genomic Variants (DGV)SPIN2B [DGVbeta]
DECIPHERSPIN2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPIN2B 
Mutations
ICGC Data PortalSPIN2B 
TCGA Data PortalSPIN2B  >TR>Broad Tumor PortalSPIN2B
OASIS PortalSPIN2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPIN2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPIN2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPIN2B
DgiDB (Drug Gene Interaction Database)SPIN2B
DoCM (Curated mutations)SPIN2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPIN2B (select a term)
intoGenSPIN2B
Cancer3DSPIN2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300517   
Orphanet
MedgenSPIN2B
Genetic Testing Registry SPIN2B
NextProtQ9BPZ2 [Medical]
TSGene474343
GENETestsSPIN2B
Target ValidationSPIN2B
Huge Navigator SPIN2B [HugePedia]
snp3D : Map Gene to Disease474343
BioCentury BCIQSPIN2B
ClinGenSPIN2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD474343
Chemical/Pharm GKB GenePA162404530
Clinical trialSPIN2B
Miscellaneous
canSAR (ICR)SPIN2B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPIN2B
EVEXSPIN2B
GoPubMedSPIN2B
iHOPSPIN2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:30:50 CET 2017

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