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SPIN3 (spindlin family, member 3)

Identity

Alias_namesspindlin family, member 3
Alias_symbol (synonym)TDRD27
Other aliasSPIN-3
bA445O16.1
HGNC (Hugo) SPIN3
LocusID (NCBI) 169981
Atlas_Id 74179
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 57017264 and ends at 57021988 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CLIP1 (12q24.31) / SPIN3 (Xp11.21)SPIN3 (Xp11.21) / RPS5 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPIN3   27272
Cards
Entrez_Gene (NCBI)SPIN3  169981  spindlin family, member 3
AliasesSPIN-3; bA445O16.1
GeneCards (Weizmann)SPIN3
Ensembl hg19 (Hinxton) [Gene_View]  chrX:57017264-57021988 [Contig_View]  SPIN3 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:57017264-57021988 [Contig_View]  SPIN3 [Vega]
TCGA cBioPortalSPIN3
AceView (NCBI)SPIN3
Genatlas (Paris)SPIN3
WikiGenes169981
SOURCE (Princeton)SPIN3
Genetics Home Reference (NIH)SPIN3
Genomic and cartography
GoldenPath hg19 (UCSC)SPIN3  -     chrX:57017264-57021988 -  Xp11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPIN3  -     Xp11.21   [Description]    (hg38-Dec_2013)
EnsemblSPIN3 - Xp11.21 [CytoView hg19]  SPIN3 - Xp11.21 [CytoView hg38]
Mapping of homologs : NCBISPIN3 [Mapview hg19]  SPIN3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ271379 AK123122 AK127485 AK304047 AL832091
RefSeq transcript (Entrez)NM_001010862
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011630 NW_004929442
Consensus coding sequences : CCDS (NCBI)SPIN3
Cluster EST : UnigeneHs.522672 [ NCBI ]
CGAP (NCI)Hs.522672
Gene ExpressionSPIN3 [ NCBI-GEO ]   SPIN3 [ EBI - ARRAY_EXPRESS ]   SPIN3 [ SEEK ]   SPIN3 [ MEM ]
Gene Expression Viewer (FireBrowse)SPIN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)169981
GTEX Portal (Tissue expression)SPIN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JUX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JUX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JUX0
Splice isoforms : SwissVarQ5JUX0
PhosPhoSitePlusQ5JUX0
Domains : Interpro (EBI)SPIN/Ssty    Spindlin-3   
Domain families : Pfam (Sanger)Spin-Ssty (PF02513)   
Domain families : Pfam (NCBI)pfam02513   
Conserved Domain (NCBI)SPIN3
DMDM Disease mutations169981
Blocks (Seattle)SPIN3
SuperfamilyQ5JUX0
Peptide AtlasQ5JUX0
HPRD18097
IPIIPI00174535   IPI00642753   
Protein Interaction databases
DIP (DOE-UCLA)Q5JUX0
IntAct (EBI)Q5JUX0
BioGRIDSPIN3
STRING (EMBL)SPIN3
ZODIACSPIN3
Ontologies - Pathways
QuickGOQ5JUX0
Ontology : AmiGOgamete generation  
Ontology : EGO-EBIgamete generation  
NDEx NetworkSPIN3
Atlas of Cancer Signalling NetworkSPIN3
Wikipedia pathwaysSPIN3
Orthology - Evolution
OrthoDB169981
Phylogenetic Trees/Animal Genes : TreeFamSPIN3
HOVERGENQ5JUX0
HOGENOMQ5JUX0
Homologs : HomoloGeneSPIN3
Homology/Alignments : Family Browser (UCSC)SPIN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPIN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPIN3
dbVarSPIN3
ClinVarSPIN3
1000_GenomesSPIN3 
Exome Variant ServerSPIN3
ExAC (Exome Aggregation Consortium)SPIN3 (select the gene name)
Genetic variants : HAPMAP169981
Genomic Variants (DGV)SPIN3 [DGVbeta]
DECIPHER (Syndromes)X:57017264-57021988  
CONAN: Copy Number AnalysisSPIN3 
Mutations
ICGC Data PortalSPIN3 
TCGA Data PortalSPIN3 
Broad Tumor PortalSPIN3
OASIS PortalSPIN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPIN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPIN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPIN3
DgiDB (Drug Gene Interaction Database)SPIN3
DoCM (Curated mutations)SPIN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPIN3 (select a term)
intoGenSPIN3
Cancer3DSPIN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPIN3
Genetic Testing Registry SPIN3
NextProtQ5JUX0 [Medical]
TSGene169981
GENETestsSPIN3
Huge Navigator SPIN3 [HugePedia]
snp3D : Map Gene to Disease169981
BioCentury BCIQSPIN3
ClinGenSPIN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD169981
Chemical/Pharm GKB GenePA134909757
Clinical trialSPIN3
Miscellaneous
canSAR (ICR)SPIN3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPIN3
EVEXSPIN3
GoPubMedSPIN3
iHOPSPIN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:30 CET 2017

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