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SPIN4 (spindlin family member 4)

Identity

Alias (NCBI)TDRD28
HGNC (Hugo) SPIN4
HGNC Alias symbFLJ44984
TDRD28
HGNC Previous namespindlin family, member 4
LocusID (NCBI) 139886
Atlas_Id 74180
Location Xq11.1  [Link to chromosome band Xq11]
Location_base_pair Starts at 63347228 and ends at 63351332 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPIN4   27040
Cards
Entrez_Gene (NCBI)SPIN4    spindlin family member 4
AliasesTDRD28
GeneCards (Weizmann)SPIN4
Ensembl hg19 (Hinxton)ENSG00000186767 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186767 [Gene_View]  ENSG00000186767 [Sequence]  chrX:63347228-63351332 [Contig_View]  SPIN4 [Vega]
ICGC DataPortalENSG00000186767
TCGA cBioPortalSPIN4
AceView (NCBI)SPIN4
Genatlas (Paris)SPIN4
SOURCE (Princeton)SPIN4
Genetics Home Reference (NIH)SPIN4
Genomic and cartography
GoldenPath hg38 (UCSC)SPIN4  -     chrX:63347228-63351332 -  Xq11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPIN4  -     Xq11.1   [Description]    (hg19-Feb_2009)
GoldenPathSPIN4 - Xq11.1 [CytoView hg19]  SPIN4 - Xq11.1 [CytoView hg38]
ImmunoBaseENSG00000186767
Genome Data Viewer NCBISPIN4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK021705 AK126931 AL833314 BC035088 BC043412
RefSeq transcript (Entrez)NM_001012968
Consensus coding sequences : CCDS (NCBI)SPIN4
Gene ExpressionSPIN4 [ NCBI-GEO ]   SPIN4 [ EBI - ARRAY_EXPRESS ]   SPIN4 [ SEEK ]   SPIN4 [ MEM ]
Gene Expression Viewer (FireBrowse)SPIN4 [ Firebrowse - Broad ]
GenevisibleExpression of SPIN4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139886
GTEX Portal (Tissue expression)SPIN4
Human Protein AtlasENSG00000186767-SPIN4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ56A73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ56A73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ56A73
PhosPhoSitePlusQ56A73
Domains : Interpro (EBI)SPIN/Ssty    SPIN/Ssty_sf    Spindlin-4   
Domain families : Pfam (Sanger)Spin-Ssty (PF02513)   
Domain families : Pfam (NCBI)pfam02513   
Conserved Domain (NCBI)SPIN4
PDB (RSDB)4UY4   
PDB Europe4UY4   
PDB (PDBSum)4UY4   
PDB (IMB)4UY4   
Structural Biology KnowledgeBase4UY4   
SCOP (Structural Classification of Proteins)4UY4   
CATH (Classification of proteins structures)4UY4   
SuperfamilyQ56A73
AlphaFold pdb e-kbQ56A73   
Human Protein Atlas [tissue]ENSG00000186767-SPIN4 [tissue]
HPRD12556
Protein Interaction databases
DIP (DOE-UCLA)Q56A73
IntAct (EBI)Q56A73
BioGRIDSPIN4
STRING (EMBL)SPIN4
ZODIACSPIN4
Ontologies - Pathways
QuickGOQ56A73
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  regulation of transcription, DNA-templated  gamete generation  methylated histone binding  methylated histone binding  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  regulation of transcription, DNA-templated  gamete generation  methylated histone binding  methylated histone binding  
NDEx NetworkSPIN4
Atlas of Cancer Signalling NetworkSPIN4
Wikipedia pathwaysSPIN4
Orthology - Evolution
OrthoDB139886
GeneTree (enSembl)ENSG00000186767
Phylogenetic Trees/Animal Genes : TreeFamSPIN4
Homologs : HomoloGeneSPIN4
Homology/Alignments : Family Browser (UCSC)SPIN4
Gene fusions - Rearrangements
Fusion : QuiverSPIN4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPIN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPIN4
dbVarSPIN4
ClinVarSPIN4
MonarchSPIN4
1000_GenomesSPIN4 
Exome Variant ServerSPIN4
GNOMAD BrowserENSG00000186767
Varsome BrowserSPIN4
ACMGSPIN4 variants
VarityQ56A73
Genomic Variants (DGV)SPIN4 [DGVbeta]
DECIPHERSPIN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPIN4 
Mutations
ICGC Data PortalSPIN4 
TCGA Data PortalSPIN4 
Broad Tumor PortalSPIN4
OASIS PortalSPIN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPIN4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPIN4
Mutations and Diseases : HGMDSPIN4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPIN4
DgiDB (Drug Gene Interaction Database)SPIN4
DoCM (Curated mutations)SPIN4
CIViC (Clinical Interpretations of Variants in Cancer)SPIN4
Cancer3DSPIN4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPIN4
MedgenSPIN4
Genetic Testing Registry SPIN4
NextProtQ56A73 [Medical]
GENETestsSPIN4
Target ValidationSPIN4
Huge Navigator SPIN4 [HugePedia]
ClinGenSPIN4
Clinical trials, drugs, therapy
MyCancerGenomeSPIN4
Protein Interactions : CTDSPIN4
Pharm GKB GenePA162404539
PharosQ56A73
Clinical trialSPIN4
Miscellaneous
canSAR (ICR)SPIN4
HarmonizomeSPIN4
DataMed IndexSPIN4
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPIN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:02 CEST 2021

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