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SPIN4 (spindlin family member 4)

Identity

Alias_namesspindlin family, member 4
Alias_symbol (synonym)FLJ44984
TDRD28
Other alias
HGNC (Hugo) SPIN4
LocusID (NCBI) 139886
Atlas_Id 74180
Location Xq11.1  [Link to chromosome band Xq11]
Location_base_pair Starts at 63347228 and ends at 63351339 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPIN4   27040
Cards
Entrez_Gene (NCBI)SPIN4  139886  spindlin family member 4
AliasesTDRD28
GeneCards (Weizmann)SPIN4
Ensembl hg19 (Hinxton)ENSG00000186767 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186767 [Gene_View]  chrX:63347228-63351339 [Contig_View]  SPIN4 [Vega]
ICGC DataPortalENSG00000186767
TCGA cBioPortalSPIN4
AceView (NCBI)SPIN4
Genatlas (Paris)SPIN4
WikiGenes139886
SOURCE (Princeton)SPIN4
Genetics Home Reference (NIH)SPIN4
Genomic and cartography
GoldenPath hg38 (UCSC)SPIN4  -     chrX:63347228-63351339 -  Xq11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPIN4  -     Xq11.1   [Description]    (hg19-Feb_2009)
EnsemblSPIN4 - Xq11.1 [CytoView hg19]  SPIN4 - Xq11.1 [CytoView hg38]
Mapping of homologs : NCBISPIN4 [Mapview hg19]  SPIN4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021705 AK126931 AL833314 BC035088 BC043412
RefSeq transcript (Entrez)NM_001012968
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPIN4
Cluster EST : UnigeneHs.612782 [ NCBI ]
CGAP (NCI)Hs.612782
Alternative Splicing GalleryENSG00000186767
Gene ExpressionSPIN4 [ NCBI-GEO ]   SPIN4 [ EBI - ARRAY_EXPRESS ]   SPIN4 [ SEEK ]   SPIN4 [ MEM ]
Gene Expression Viewer (FireBrowse)SPIN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139886
GTEX Portal (Tissue expression)SPIN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ56A73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ56A73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ56A73
Splice isoforms : SwissVarQ56A73
PhosPhoSitePlusQ56A73
Domains : Interpro (EBI)SPIN/Ssty    Spindlin-4   
Domain families : Pfam (Sanger)Spin-Ssty (PF02513)   
Domain families : Pfam (NCBI)pfam02513   
Conserved Domain (NCBI)SPIN4
DMDM Disease mutations139886
Blocks (Seattle)SPIN4
PDB (SRS)4UY4   
PDB (PDBSum)4UY4   
PDB (IMB)4UY4   
PDB (RSDB)4UY4   
Structural Biology KnowledgeBase4UY4   
SCOP (Structural Classification of Proteins)4UY4   
CATH (Classification of proteins structures)4UY4   
SuperfamilyQ56A73
Human Protein AtlasENSG00000186767
Peptide AtlasQ56A73
HPRD12556
IPIIPI00798142   
Protein Interaction databases
DIP (DOE-UCLA)Q56A73
IntAct (EBI)Q56A73
FunCoupENSG00000186767
BioGRIDSPIN4
STRING (EMBL)SPIN4
ZODIACSPIN4
Ontologies - Pathways
QuickGOQ56A73
Ontology : AmiGOgamete generation  
Ontology : EGO-EBIgamete generation  
NDEx NetworkSPIN4
Atlas of Cancer Signalling NetworkSPIN4
Wikipedia pathwaysSPIN4
Orthology - Evolution
OrthoDB139886
GeneTree (enSembl)ENSG00000186767
Phylogenetic Trees/Animal Genes : TreeFamSPIN4
HOVERGENQ56A73
HOGENOMQ56A73
Homologs : HomoloGeneSPIN4
Homology/Alignments : Family Browser (UCSC)SPIN4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPIN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPIN4
dbVarSPIN4
ClinVarSPIN4
1000_GenomesSPIN4 
Exome Variant ServerSPIN4
ExAC (Exome Aggregation Consortium)SPIN4 (select the gene name)
Genetic variants : HAPMAP139886
Genomic Variants (DGV)SPIN4 [DGVbeta]
DECIPHERSPIN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPIN4 
Mutations
ICGC Data PortalSPIN4 
TCGA Data PortalSPIN4 
Broad Tumor PortalSPIN4
OASIS PortalSPIN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPIN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPIN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPIN4
DgiDB (Drug Gene Interaction Database)SPIN4
DoCM (Curated mutations)SPIN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPIN4 (select a term)
intoGenSPIN4
Cancer3DSPIN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPIN4
Genetic Testing Registry SPIN4
NextProtQ56A73 [Medical]
TSGene139886
GENETestsSPIN4
Target ValidationSPIN4
Huge Navigator SPIN4 [HugePedia]
snp3D : Map Gene to Disease139886
BioCentury BCIQSPIN4
ClinGenSPIN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139886
Chemical/Pharm GKB GenePA162404539
Clinical trialSPIN4
Miscellaneous
canSAR (ICR)SPIN4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPIN4
EVEXSPIN4
GoPubMedSPIN4
iHOPSPIN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:22 CEST 2017

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