Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPINDOC (spindlin interactor and repressor of chromatin binding)

Identity

Alias (NCBI)C11orf84
SPIN-DOC
HGNC (Hugo) SPINDOC
LocusID (NCBI) 144097
Atlas_Id 80638
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 63813456 and ends at 63827716 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)SPINDOC   25115
Cards
Entrez_Gene (NCBI)SPINDOC    spindlin interactor and repressor of chromatin binding
AliasesC11orf84; SPIN-DOC
GeneCards (Weizmann)SPINDOC
Ensembl hg19 (Hinxton)ENSG00000168005 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168005 [Gene_View]  ENSG00000168005 [Sequence]  chr11:63813456-63827716 [Contig_View]  SPINDOC [Vega]
ICGC DataPortalENSG00000168005
TCGA cBioPortalSPINDOC
AceView (NCBI)SPINDOC
Genatlas (Paris)SPINDOC
SOURCE (Princeton)SPINDOC
Genetics Home Reference (NIH)SPINDOC
Genomic and cartography
GoldenPath hg38 (UCSC)SPINDOC  -     chr11:63813456-63827716 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPINDOC  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathSPINDOC - 11q13.1 [CytoView hg19]  SPINDOC - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000168005
Genome Data Viewer NCBISPINDOC [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK091493 AK092098 BC002782 BC007540 BC056402
RefSeq transcript (Entrez)NM_138471
Consensus coding sequences : CCDS (NCBI)SPINDOC
Gene ExpressionSPINDOC [ NCBI-GEO ]   SPINDOC [ EBI - ARRAY_EXPRESS ]   SPINDOC [ SEEK ]   SPINDOC [ MEM ]
Gene Expression Viewer (FireBrowse)SPINDOC [ Firebrowse - Broad ]
GenevisibleExpression of SPINDOC in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144097
GTEX Portal (Tissue expression)SPINDOC
Human Protein AtlasENSG00000168005-SPINDOC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUA3
PhosPhoSitePlusQ9BUA3
Domains : Interpro (EBI)SPIN-DOC_Znf-C2H2   
Domain families : Pfam (Sanger)zf-C2H2_12 (PF18658)   
Domain families : Pfam (NCBI)pfam18658   
Conserved Domain (NCBI)SPINDOC
SuperfamilyQ9BUA3
AlphaFold pdb e-kbQ9BUA3   
Human Protein Atlas [tissue]ENSG00000168005-SPINDOC [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9BUA3
IntAct (EBI)Q9BUA3
BioGRIDSPINDOC
STRING (EMBL)SPINDOC
ZODIACSPINDOC
Ontologies - Pathways
QuickGOQ9BUA3
Ontology : AmiGOprotein binding  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  
NDEx NetworkSPINDOC
Atlas of Cancer Signalling NetworkSPINDOC
Wikipedia pathwaysSPINDOC
Orthology - Evolution
OrthoDB144097
GeneTree (enSembl)ENSG00000168005
Phylogenetic Trees/Animal Genes : TreeFamSPINDOC
Homologs : HomoloGeneSPINDOC
Homology/Alignments : Family Browser (UCSC)SPINDOC
Gene fusions - Rearrangements
Fusion : QuiverSPINDOC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPINDOC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPINDOC
dbVarSPINDOC
ClinVarSPINDOC
MonarchSPINDOC
1000_GenomesSPINDOC 
Exome Variant ServerSPINDOC
GNOMAD BrowserENSG00000168005
Varsome BrowserSPINDOC
ACMGSPINDOC variants
VarityQ9BUA3
Genomic Variants (DGV)SPINDOC [DGVbeta]
DECIPHERSPINDOC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPINDOC 
Mutations
ICGC Data PortalSPINDOC 
TCGA Data PortalSPINDOC 
Broad Tumor PortalSPINDOC
OASIS PortalSPINDOC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPINDOC  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPINDOC
Mutations and Diseases : HGMDSPINDOC
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPINDOC
DgiDB (Drug Gene Interaction Database)SPINDOC
DoCM (Curated mutations)SPINDOC
CIViC (Clinical Interpretations of Variants in Cancer)SPINDOC
Cancer3DSPINDOC
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPINDOC
MedgenSPINDOC
Genetic Testing Registry SPINDOC
NextProtQ9BUA3 [Medical]
GENETestsSPINDOC
Target ValidationSPINDOC
Huge Navigator SPINDOC [HugePedia]
ClinGenSPINDOC
Clinical trials, drugs, therapy
MyCancerGenomeSPINDOC
Protein Interactions : CTDSPINDOC
Pharm GKB GenePA162377769
PharosQ9BUA3
Clinical trialSPINDOC
Miscellaneous
canSAR (ICR)SPINDOC
HarmonizomeSPINDOC
DataMed IndexSPINDOC
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPINDOC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:24:02 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.