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SPINDOC (spindlin interactor and repressor of chromatin binding)

Identity

Other aliasC11orf84
SPIN-DOC
HGNC (Hugo) SPINDOC
LocusID (NCBI) 144097
Atlas_Id 80638
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 63813374 and ends at 63827718 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SPINDOC   25115
Cards
Entrez_Gene (NCBI)SPINDOC  144097  spindlin interactor and repressor of chromatin binding
AliasesC11orf84; SPIN-DOC
GeneCards (Weizmann)SPINDOC
Ensembl hg19 (Hinxton)ENSG00000168005 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168005 [Gene_View]  ENSG00000168005 [Sequence]  chr11:63813374-63827718 [Contig_View]  SPINDOC [Vega]
ICGC DataPortalENSG00000168005
TCGA cBioPortalSPINDOC
AceView (NCBI)SPINDOC
Genatlas (Paris)SPINDOC
WikiGenes144097
SOURCE (Princeton)SPINDOC
Genetics Home Reference (NIH)SPINDOC
Genomic and cartography
GoldenPath hg38 (UCSC)SPINDOC  -     chr11:63813374-63827718 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPINDOC  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathSPINDOC - 11q13.1 [CytoView hg19]  SPINDOC - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000168005
Mapping of homologs : NCBISPINDOC [Mapview hg19]  SPINDOC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091493 AK092098 BC002782 BC007540 BC056402
RefSeq transcript (Entrez)NM_138471
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPINDOC
Cluster EST : UnigeneHs.502793 [ NCBI ]
CGAP (NCI)Hs.502793
Alternative Splicing GalleryENSG00000168005
Gene ExpressionSPINDOC [ NCBI-GEO ]   SPINDOC [ EBI - ARRAY_EXPRESS ]   SPINDOC [ SEEK ]   SPINDOC [ MEM ]
Gene Expression Viewer (FireBrowse)SPINDOC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144097
GTEX Portal (Tissue expression)SPINDOC
Human Protein AtlasENSG00000168005-SPINDOC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUA3
Splice isoforms : SwissVarQ9BUA3
PhosPhoSitePlusQ9BUA3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPINDOC
DMDM Disease mutations144097
Blocks (Seattle)SPINDOC
SuperfamilyQ9BUA3
Human Protein Atlas [tissue]ENSG00000168005-SPINDOC [tissue]
Peptide AtlasQ9BUA3
IPIIPI00106955   IPI01014669   IPI01010757   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUA3
IntAct (EBI)Q9BUA3
FunCoupENSG00000168005
BioGRIDSPINDOC
STRING (EMBL)SPINDOC
ZODIACSPINDOC
Ontologies - Pathways
QuickGOQ9BUA3
Ontology : AmiGOprotein binding  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  
NDEx NetworkSPINDOC
Atlas of Cancer Signalling NetworkSPINDOC
Wikipedia pathwaysSPINDOC
Orthology - Evolution
OrthoDB144097
GeneTree (enSembl)ENSG00000168005
Phylogenetic Trees/Animal Genes : TreeFamSPINDOC
HOGENOMQ9BUA3
Homologs : HomoloGeneSPINDOC
Homology/Alignments : Family Browser (UCSC)SPINDOC
Gene fusions - Rearrangements
Fusion : QuiverSPINDOC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPINDOC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPINDOC
dbVarSPINDOC
ClinVarSPINDOC
1000_GenomesSPINDOC 
Exome Variant ServerSPINDOC
ExAC (Exome Aggregation Consortium)ENSG00000168005
GNOMAD BrowserENSG00000168005
Varsome BrowserSPINDOC
Genetic variants : HAPMAP144097
Genomic Variants (DGV)SPINDOC [DGVbeta]
DECIPHERSPINDOC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPINDOC 
Mutations
ICGC Data PortalSPINDOC 
TCGA Data PortalSPINDOC 
Broad Tumor PortalSPINDOC
OASIS PortalSPINDOC [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPINDOC
BioMutasearch SPINDOC
DgiDB (Drug Gene Interaction Database)SPINDOC
DoCM (Curated mutations)SPINDOC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPINDOC (select a term)
intoGenSPINDOC
Cancer3DSPINDOC(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPINDOC
MedgenSPINDOC
Genetic Testing Registry SPINDOC
NextProtQ9BUA3 [Medical]
TSGene144097
GENETestsSPINDOC
Target ValidationSPINDOC
Huge Navigator SPINDOC [HugePedia]
snp3D : Map Gene to Disease144097
BioCentury BCIQSPINDOC
ClinGenSPINDOC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144097
Chemical/Pharm GKB GenePA162377769
Clinical trialSPINDOC
Miscellaneous
canSAR (ICR)SPINDOC (select the gene name)
DataMed IndexSPINDOC
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPINDOC
EVEXSPINDOC
GoPubMedSPINDOC
iHOPSPINDOC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:08:33 CEST 2019

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