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SPINK13 (serine peptidase inhibitor, Kazal type 13 (putative))

Identity

Alias_symbol (synonym)SPINK5L3
LiESP6
HESPINTOR
MGC149260
HBVDNAPTP1
Other alias
HGNC (Hugo) SPINK13
LocusID (NCBI) 153218
Atlas_Id 74181
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 148268860 and ends at 148286210 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPINK13   27200
Cards
Entrez_Gene (NCBI)SPINK13  153218  serine peptidase inhibitor, Kazal type 13 (putative)
AliasesHBVDNAPTP1; HESPINTOR; LiESP6; SPINK5L3
GeneCards (Weizmann)SPINK13
Ensembl hg19 (Hinxton)ENSG00000214510 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214510 [Gene_View]  chr5:148268860-148286210 [Contig_View]  SPINK13 [Vega]
ICGC DataPortalENSG00000214510
TCGA cBioPortalSPINK13
AceView (NCBI)SPINK13
Genatlas (Paris)SPINK13
WikiGenes153218
SOURCE (Princeton)SPINK13
Genetics Home Reference (NIH)SPINK13
Genomic and cartography
GoldenPath hg38 (UCSC)SPINK13  -     chr5:148268860-148286210 +  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPINK13  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblSPINK13 - 5q32 [CytoView hg19]  SPINK13 - 5q32 [CytoView hg38]
Mapping of homologs : NCBISPINK13 [Mapview hg19]  SPINK13 [Mapview hg38]
OMIM615205   
Gene and transcription
Genbank (Entrez)AK001520 BC128163 BC128164 DQ438947 EF108324
RefSeq transcript (Entrez)NM_001040129
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPINK13
Cluster EST : UnigeneHs.483771 [ NCBI ]
CGAP (NCI)Hs.483771
Alternative Splicing GalleryENSG00000214510
Gene ExpressionSPINK13 [ NCBI-GEO ]   SPINK13 [ EBI - ARRAY_EXPRESS ]   SPINK13 [ SEEK ]   SPINK13 [ MEM ]
Gene Expression Viewer (FireBrowse)SPINK13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153218
GTEX Portal (Tissue expression)SPINK13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1W4C9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1W4C9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1W4C9
Splice isoforms : SwissVarQ1W4C9
PhosPhoSitePlusQ1W4C9
Domaine pattern : Prosite (Expaxy)KAZAL_2 (PS51465)   
Domains : Interpro (EBI)Kazal_dom   
Domain families : Pfam (Sanger)Kazal_1 (PF00050)   
Domain families : Pfam (NCBI)pfam00050   
Domain families : Smart (EMBL)KAZAL (SM00280)  
Conserved Domain (NCBI)SPINK13
DMDM Disease mutations153218
Blocks (Seattle)SPINK13
SuperfamilyQ1W4C9
Human Protein AtlasENSG00000214510
Peptide AtlasQ1W4C9
IPIIPI00401108   IPI00900270   
Protein Interaction databases
DIP (DOE-UCLA)Q1W4C9
IntAct (EBI)Q1W4C9
FunCoupENSG00000214510
BioGRIDSPINK13
STRING (EMBL)SPINK13
ZODIACSPINK13
Ontologies - Pathways
QuickGOQ1W4C9
Ontology : AmiGOacrosomal vesicle  serine-type endopeptidase inhibitor activity  extracellular space  regulation of acrosome reaction  negative regulation of serine-type endopeptidase activity  negative regulation of acrosome reaction  
Ontology : EGO-EBIacrosomal vesicle  serine-type endopeptidase inhibitor activity  extracellular space  regulation of acrosome reaction  negative regulation of serine-type endopeptidase activity  negative regulation of acrosome reaction  
NDEx NetworkSPINK13
Atlas of Cancer Signalling NetworkSPINK13
Wikipedia pathwaysSPINK13
Orthology - Evolution
OrthoDB153218
GeneTree (enSembl)ENSG00000214510
Phylogenetic Trees/Animal Genes : TreeFamSPINK13
HOVERGENQ1W4C9
HOGENOMQ1W4C9
Homologs : HomoloGeneSPINK13
Homology/Alignments : Family Browser (UCSC)SPINK13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPINK13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPINK13
dbVarSPINK13
ClinVarSPINK13
1000_GenomesSPINK13 
Exome Variant ServerSPINK13
ExAC (Exome Aggregation Consortium)SPINK13 (select the gene name)
Genetic variants : HAPMAP153218
Genomic Variants (DGV)SPINK13 [DGVbeta]
DECIPHERSPINK13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPINK13 
Mutations
ICGC Data PortalSPINK13 
TCGA Data PortalSPINK13 
Broad Tumor PortalSPINK13
OASIS PortalSPINK13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPINK13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPINK13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPINK13
DgiDB (Drug Gene Interaction Database)SPINK13
DoCM (Curated mutations)SPINK13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPINK13 (select a term)
intoGenSPINK13
Cancer3DSPINK13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615205   
Orphanet
MedgenSPINK13
Genetic Testing Registry SPINK13
NextProtQ1W4C9 [Medical]
TSGene153218
GENETestsSPINK13
Target ValidationSPINK13
Huge Navigator SPINK13 [HugePedia]
snp3D : Map Gene to Disease153218
BioCentury BCIQSPINK13
ClinGenSPINK13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153218
Chemical/Pharm GKB GenePA165660568
Clinical trialSPINK13
Miscellaneous
canSAR (ICR)SPINK13 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPINK13
EVEXSPINK13
GoPubMedSPINK13
iHOPSPINK13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:59 CEST 2017

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