Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPINK5 (serine peptidase inhibitor Kazal type 5)

Identity

Alias (NCBI)LEKTI
LETKI
NETS
NS
VAKTI
HGNC (Hugo) SPINK5
HGNC Alias symbVAKTI
LEKTI
LETKI
NETS
NS
FLJ21544
FLJ97536
FLJ97596
FLJ99794
DKFZp686K19184
HGNC Alias namelymphoepithelial Kazal-type-related inhibitor
HGNC Previous nameserine protease inhibitor, Kazal type 5
LocusID (NCBI) 11005
Atlas_Id 43889
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 148063980 and ends at 148137381 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC25A25 (9q34.11) / SPINK5 (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SPINK5   15464
LRG (Locus Reference Genomic)LRG_110
Cards
Entrez_Gene (NCBI)SPINK5    serine peptidase inhibitor Kazal type 5
AliasesLEKTI; LETKI; NETS; NS; 
VAKTI
GeneCards (Weizmann)SPINK5
Ensembl hg19 (Hinxton)ENSG00000133710 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133710 [Gene_View]  ENSG00000133710 [Sequence]  chr5:148063980-148137381 [Contig_View]  SPINK5 [Vega]
ICGC DataPortalENSG00000133710
TCGA cBioPortalSPINK5
AceView (NCBI)SPINK5
Genatlas (Paris)SPINK5
SOURCE (Princeton)SPINK5
Genetics Home Reference (NIH)SPINK5
Genomic and cartography
GoldenPath hg38 (UCSC)SPINK5  -     chr5:148063980-148137381 +  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPINK5  -     5q32   [Description]    (hg19-Feb_2009)
GoldenPathSPINK5 - 5q32 [CytoView hg19]  SPINK5 - 5q32 [CytoView hg38]
ImmunoBaseENSG00000133710
genome Data Viewer NCBISPINK5 [Mapview hg19]  
OMIM256500   605010   
Gene and transcription
Genbank (Entrez)AF086524 AF147363 AI341060 AJ228139 AK025197
RefSeq transcript (Entrez)NM_001127698 NM_001127699 NM_006846
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPINK5
Alternative Splicing GalleryENSG00000133710
Gene ExpressionSPINK5 [ NCBI-GEO ]   SPINK5 [ EBI - ARRAY_EXPRESS ]   SPINK5 [ SEEK ]   SPINK5 [ MEM ]
Gene Expression Viewer (FireBrowse)SPINK5 [ Firebrowse - Broad ]
GenevisibleExpression of SPINK5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11005
GTEX Portal (Tissue expression)SPINK5
Human Protein AtlasENSG00000133710-SPINK5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPINK5
Blocks (Seattle)SPINK5
Human Protein Atlas [tissue]ENSG00000133710-SPINK5 [tissue]
HPRD05423
IPIIPI00478816   IPI00936431   IPI00654656   IPI00968089   IPI00982385   IPI00974061   
Protein Interaction databases
BioGRIDSPINK5
STRING (EMBL)SPINK5
ZODIACSPINK5
Ontologies - Pathways
Litterature
PubMed87 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPINK5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:47:23 CET 2021

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