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SPINK9 (serine peptidase inhibitor, Kazal type 9)

Identity

Other aliasLEKTI2
HGNC (Hugo) SPINK9
LocusID (NCBI) 643394
Atlas_Id 74186
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 148335559 and ends at 148339849 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPINK9   32951
Cards
Entrez_Gene (NCBI)SPINK9  643394  serine peptidase inhibitor, Kazal type 9
AliasesLEKTI2
GeneCards (Weizmann)SPINK9
Ensembl hg19 (Hinxton)ENSG00000204909 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204909 [Gene_View]  chr5:148335559-148339849 [Contig_View]  SPINK9 [Vega]
ICGC DataPortalENSG00000204909
TCGA cBioPortalSPINK9
AceView (NCBI)SPINK9
Genatlas (Paris)SPINK9
WikiGenes643394
SOURCE (Princeton)SPINK9
Genetics Home Reference (NIH)SPINK9
Genomic and cartography
GoldenPath hg38 (UCSC)SPINK9  -     chr5:148335559-148339849 +  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPINK9  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblSPINK9 - 5q32 [CytoView hg19]  SPINK9 - 5q32 [CytoView hg38]
Mapping of homologs : NCBISPINK9 [Mapview hg19]  SPINK9 [Mapview hg38]
OMIM613511   
Gene and transcription
Genbank (Entrez)AY396740 BC137530 BC137531
RefSeq transcript (Entrez)NM_001040433
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPINK9
Cluster EST : UnigeneHs.631798 [ NCBI ]
CGAP (NCI)Hs.631798
Alternative Splicing GalleryENSG00000204909
Gene ExpressionSPINK9 [ NCBI-GEO ]   SPINK9 [ EBI - ARRAY_EXPRESS ]   SPINK9 [ SEEK ]   SPINK9 [ MEM ]
Gene Expression Viewer (FireBrowse)SPINK9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643394
GTEX Portal (Tissue expression)SPINK9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5DT21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5DT21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5DT21
Splice isoforms : SwissVarQ5DT21
PhosPhoSitePlusQ5DT21
Domaine pattern : Prosite (Expaxy)KAZAL_1 (PS00282)    KAZAL_2 (PS51465)   
Domains : Interpro (EBI)Kazal_dom    Prot_inh_Kazal-m   
Domain families : Pfam (Sanger)Kazal_1 (PF00050)   
Domain families : Pfam (NCBI)pfam00050   
Domain families : Smart (EMBL)KAZAL (SM00280)  
Conserved Domain (NCBI)SPINK9
DMDM Disease mutations643394
Blocks (Seattle)SPINK9
SuperfamilyQ5DT21
Human Protein AtlasENSG00000204909
Peptide AtlasQ5DT21
IPIIPI00554768   IPI00966537   
Protein Interaction databases
DIP (DOE-UCLA)Q5DT21
IntAct (EBI)Q5DT21
FunCoupENSG00000204909
BioGRIDSPINK9
STRING (EMBL)SPINK9
ZODIACSPINK9
Ontologies - Pathways
QuickGOQ5DT21
Ontology : AmiGOacrosomal vesicle  serine-type endopeptidase inhibitor activity  protein binding  extracellular region  extracellular space  regulation of acrosome reaction  cornification  negative regulation of serine-type endopeptidase activity  
Ontology : EGO-EBIacrosomal vesicle  serine-type endopeptidase inhibitor activity  protein binding  extracellular region  extracellular space  regulation of acrosome reaction  cornification  negative regulation of serine-type endopeptidase activity  
NDEx NetworkSPINK9
Atlas of Cancer Signalling NetworkSPINK9
Wikipedia pathwaysSPINK9
Orthology - Evolution
OrthoDB643394
GeneTree (enSembl)ENSG00000204909
Phylogenetic Trees/Animal Genes : TreeFamSPINK9
HOVERGENQ5DT21
HOGENOMQ5DT21
Homologs : HomoloGeneSPINK9
Homology/Alignments : Family Browser (UCSC)SPINK9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPINK9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPINK9
dbVarSPINK9
ClinVarSPINK9
1000_GenomesSPINK9 
Exome Variant ServerSPINK9
ExAC (Exome Aggregation Consortium)SPINK9 (select the gene name)
Genetic variants : HAPMAP643394
Genomic Variants (DGV)SPINK9 [DGVbeta]
DECIPHERSPINK9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPINK9 
Mutations
ICGC Data PortalSPINK9 
TCGA Data PortalSPINK9 
Broad Tumor PortalSPINK9
OASIS PortalSPINK9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPINK9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPINK9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPINK9
DgiDB (Drug Gene Interaction Database)SPINK9
DoCM (Curated mutations)SPINK9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPINK9 (select a term)
intoGenSPINK9
Cancer3DSPINK9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613511   
Orphanet
MedgenSPINK9
Genetic Testing Registry SPINK9
NextProtQ5DT21 [Medical]
TSGene643394
GENETestsSPINK9
Target ValidationSPINK9
Huge Navigator SPINK9 [HugePedia]
snp3D : Map Gene to Disease643394
BioCentury BCIQSPINK9
ClinGenSPINK9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643394
Chemical/Pharm GKB GenePA162404560
Clinical trialSPINK9
Miscellaneous
canSAR (ICR)SPINK9 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPINK9
EVEXSPINK9
GoPubMedSPINK9
iHOPSPINK9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:22 CEST 2017

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