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SPINT4 (serine peptidase inhibitor, Kunitz type 4)

Identity

Alias_namesC20orf137
chromosome 20 open reading frame 137
serine peptidase inhibitor, Kunitz type 4
Alias_symbol (synonym)dJ601O1.1
Other aliasSPINT3
HGNC (Hugo) SPINT4
LocusID (NCBI) 391253
Atlas_Id 74188
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 44350988 and ends at 44354335 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPINT4   16130
Cards
Entrez_Gene (NCBI)SPINT4  391253  serine peptidase inhibitor, Kunitz type 4
AliasesC20orf137; SPINT3; dJ601O1.1
GeneCards (Weizmann)SPINT4
Ensembl hg19 (Hinxton) [Gene_View]  chr20:44350988-44354335 [Contig_View]  SPINT4 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:44350988-44354335 [Contig_View]  SPINT4 [Vega]
TCGA cBioPortalSPINT4
AceView (NCBI)SPINT4
Genatlas (Paris)SPINT4
WikiGenes391253
SOURCE (Princeton)SPINT4
Genetics Home Reference (NIH)SPINT4
Genomic and cartography
GoldenPath hg19 (UCSC)SPINT4  -     chr20:44350988-44354335 +  20q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPINT4  -     20q13.12   [Description]    (hg38-Dec_2013)
EnsemblSPINT4 - 20q13.12 [CytoView hg19]  SPINT4 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBISPINT4 [Mapview hg19]  SPINT4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY372173 AY372174
RefSeq transcript (Entrez)NM_178455
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)SPINT4
Cluster EST : UnigeneHs.677891 [ NCBI ]
CGAP (NCI)Hs.677891
Gene ExpressionSPINT4 [ NCBI-GEO ]   SPINT4 [ EBI - ARRAY_EXPRESS ]   SPINT4 [ SEEK ]   SPINT4 [ MEM ]
Gene Expression Viewer (FireBrowse)SPINT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391253
GTEX Portal (Tissue expression)SPINT4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UDR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UDR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UDR6
Splice isoforms : SwissVarQ6UDR6
PhosPhoSitePlusQ6UDR6
Domaine pattern : Prosite (Expaxy)BPTI_KUNITZ_2 (PS50279)   
Domains : Interpro (EBI)Prot_inh_Kunz-m   
Domain families : Pfam (Sanger)Kunitz_BPTI (PF00014)   
Domain families : Pfam (NCBI)pfam00014   
Domain families : Smart (EMBL)KU (SM00131)  
Conserved Domain (NCBI)SPINT4
DMDM Disease mutations391253
Blocks (Seattle)SPINT4
SuperfamilyQ6UDR6
Peptide AtlasQ6UDR6
IPIIPI00376327   
Protein Interaction databases
DIP (DOE-UCLA)Q6UDR6
IntAct (EBI)Q6UDR6
BioGRIDSPINT4
STRING (EMBL)SPINT4
ZODIACSPINT4
Ontologies - Pathways
QuickGOQ6UDR6
Ontology : AmiGOserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
Ontology : EGO-EBIserine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
NDEx NetworkSPINT4
Atlas of Cancer Signalling NetworkSPINT4
Wikipedia pathwaysSPINT4
Orthology - Evolution
OrthoDB391253
Phylogenetic Trees/Animal Genes : TreeFamSPINT4
HOVERGENQ6UDR6
HOGENOMQ6UDR6
Homologs : HomoloGeneSPINT4
Homology/Alignments : Family Browser (UCSC)SPINT4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPINT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPINT4
dbVarSPINT4
ClinVarSPINT4
1000_GenomesSPINT4 
Exome Variant ServerSPINT4
ExAC (Exome Aggregation Consortium)SPINT4 (select the gene name)
Genetic variants : HAPMAP391253
Genomic Variants (DGV)SPINT4 [DGVbeta]
DECIPHER (Syndromes)20:44350988-44354335  
CONAN: Copy Number AnalysisSPINT4 
Mutations
ICGC Data PortalSPINT4 
TCGA Data PortalSPINT4 
Broad Tumor PortalSPINT4
OASIS PortalSPINT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPINT4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPINT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPINT4
DgiDB (Drug Gene Interaction Database)SPINT4
DoCM (Curated mutations)SPINT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPINT4 (select a term)
intoGenSPINT4
Cancer3DSPINT4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPINT4
Genetic Testing Registry SPINT4
NextProtQ6UDR6 [Medical]
TSGene391253
GENETestsSPINT4
Huge Navigator SPINT4 [HugePedia]
snp3D : Map Gene to Disease391253
BioCentury BCIQSPINT4
ClinGenSPINT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391253
Chemical/Pharm GKB GenePA25679
Clinical trialSPINT4
Miscellaneous
canSAR (ICR)SPINT4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPINT4
EVEXSPINT4
GoPubMedSPINT4
iHOPSPINT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:32 CET 2017

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