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SPN (sialophorin)

Identity

Alias_namessialophorin (gpL115
Alias_symbol (synonym)LSN
CD43
GPL115
Other aliasGALGP
HGNC (Hugo) SPN
LocusID (NCBI) 6693
Atlas_Id 43678
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29662950 and ends at 29670502 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPN   11249
Cards
Entrez_Gene (NCBI)SPN  6693  sialophorin
AliasesCD43; GALGP; GPL115; LSN
GeneCards (Weizmann)SPN
Ensembl hg19 (Hinxton)ENSG00000197471 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197471 [Gene_View]  chr16:29662950-29670502 [Contig_View]  SPN [Vega]
ICGC DataPortalENSG00000197471
TCGA cBioPortalSPN
AceView (NCBI)SPN
Genatlas (Paris)SPN
WikiGenes6693
SOURCE (Princeton)SPN
Genetics Home Reference (NIH)SPN
Genomic and cartography
GoldenPath hg38 (UCSC)SPN  -     chr16:29662950-29670502 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPN  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblSPN - 16p11.2 [CytoView hg19]  SPN - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBISPN [Mapview hg19]  SPN [Mapview hg38]
OMIM182160   
Gene and transcription
Genbank (Entrez)AK292626 AK313750 BC012350 BC035510 DA951208
RefSeq transcript (Entrez)NM_001030288 NM_003123
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPN
Cluster EST : UnigeneHs.632188 [ NCBI ]
CGAP (NCI)Hs.632188
Alternative Splicing GalleryENSG00000197471
Gene ExpressionSPN [ NCBI-GEO ]   SPN [ EBI - ARRAY_EXPRESS ]   SPN [ SEEK ]   SPN [ MEM ]
Gene Expression Viewer (FireBrowse)SPN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6693
GTEX Portal (Tissue expression)SPN
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16150   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16150  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16150
Splice isoforms : SwissVarP16150
PhosPhoSitePlusP16150
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPN
DMDM Disease mutations6693
Blocks (Seattle)SPN
SuperfamilyP16150
Human Protein AtlasENSG00000197471
Peptide AtlasP16150
HPRD06770
IPIIPI00027430   IPI00853215   
Protein Interaction databases
DIP (DOE-UCLA)P16150
IntAct (EBI)P16150
FunCoupENSG00000197471
BioGRIDSPN
STRING (EMBL)SPN
ZODIACSPN
Ontologies - Pathways
QuickGOP16150
Ontology : AmiGOresponse to protozoan  negative regulation of type IV hypersensitivity  uropod  positive regulation of protein phosphorylation  transmembrane signaling receptor activity  basement membrane  extracellular space  plasma membrane  integral component of plasma membrane  chemotaxis  immune response  cellular defense response  negative regulation of cell adhesion  establishment or maintenance of cell polarity  signal transduction  cell surface receptor signaling pathway  external side of plasma membrane  cell surface  membrane  Hsp70 protein binding  heat shock protein binding  T cell costimulation  positive regulation of T cell proliferation  negative regulation of T cell proliferation  positive regulation of tumor necrosis factor biosynthetic process  defense response to bacterium  negative thymic T cell selection  regulation of defense response to virus  leukocyte migration  extracellular exosome  apoptotic signaling pathway  
Ontology : EGO-EBIresponse to protozoan  negative regulation of type IV hypersensitivity  uropod  positive regulation of protein phosphorylation  transmembrane signaling receptor activity  basement membrane  extracellular space  plasma membrane  integral component of plasma membrane  chemotaxis  immune response  cellular defense response  negative regulation of cell adhesion  establishment or maintenance of cell polarity  signal transduction  cell surface receptor signaling pathway  external side of plasma membrane  cell surface  membrane  Hsp70 protein binding  heat shock protein binding  T cell costimulation  positive regulation of T cell proliferation  negative regulation of T cell proliferation  positive regulation of tumor necrosis factor biosynthetic process  defense response to bacterium  negative thymic T cell selection  regulation of defense response to virus  leukocyte migration  extracellular exosome  apoptotic signaling pathway  
Pathways : KEGGCell adhesion molecules (CAMs)    Epstein-Barr virus infection   
NDEx NetworkSPN
Atlas of Cancer Signalling NetworkSPN
Wikipedia pathwaysSPN
Orthology - Evolution
OrthoDB6693
GeneTree (enSembl)ENSG00000197471
Phylogenetic Trees/Animal Genes : TreeFamSPN
HOVERGENP16150
HOGENOMP16150
Homologs : HomoloGeneSPN
Homology/Alignments : Family Browser (UCSC)SPN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPN
dbVarSPN
ClinVarSPN
1000_GenomesSPN 
Exome Variant ServerSPN
ExAC (Exome Aggregation Consortium)SPN (select the gene name)
Genetic variants : HAPMAP6693
Genomic Variants (DGV)SPN [DGVbeta]
DECIPHERSPN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPN 
Mutations
ICGC Data PortalSPN 
TCGA Data PortalSPN 
Broad Tumor PortalSPN
OASIS PortalSPN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPN
DgiDB (Drug Gene Interaction Database)SPN
DoCM (Curated mutations)SPN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPN (select a term)
intoGenSPN
Cancer3DSPN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182160   
Orphanet
MedgenSPN
Genetic Testing Registry SPN
NextProtP16150 [Medical]
TSGene6693
GENETestsSPN
Target ValidationSPN
Huge Navigator SPN [HugePedia]
snp3D : Map Gene to Disease6693
BioCentury BCIQSPN
ClinGenSPN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6693
Chemical/Pharm GKB GenePA36079
Clinical trialSPN
Miscellaneous
canSAR (ICR)SPN (select the gene name)
Probes
Litterature
PubMed76 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPN
EVEXSPN
GoPubMedSPN
iHOPSPN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:32:47 CEST 2017

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