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SPN (sialophorin)

Identity

Other namesCD43
GALGP
GPL115
LSN
HGNC (Hugo) SPN
LocusID (NCBI) 6693
Location 16p11.2
Location_base_pair Starts at 29674271 and ends at 29681823 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SPN   11249
Entrez_Gene (NCBI)SPN  6693  sialophorin
Cards
GeneCards (Weizmann)SPN
Ensembl (Hinxton)ENSG00000197471 [Gene_View]  chr16:29674271-29681823 [Contig_View]  SPN [Vega]
AceView (NCBI)SPN
Genatlas (Paris)SPN
SOURCE (Stanford)NM_001030288 NM_003123
Genomic and cartography
GoldenPath (UCSC)SPN  -  16p11.2   chr16:29674271-29681823 +  16p11.2   [Description]    (hg19-Feb_2009)
EnsemblSPN - 16p11.2 [CytoView]
Mapping of homologs : NCBISPN [Mapview]
OMIM182160   
Gene and transcription
Genbank (Entrez)AK292626 AK313750 BC012350 BC035510 DA951208
RefSeq transcript (SRS)NM_001030288 NM_003123
RefSeq transcript (Entrez)NM_001030288 NM_003123
RefSeq genomic (SRS)AC_000148 NC_000016 NC_018927 NT_010393 NW_001838235 NW_004078085
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_010393 NW_001838235 NW_004078085
Consensus coding sequences : CCDS (NCBI)SPN
Cluster EST : UnigeneHs.632188 [ SRS ] Hs.632188 [ NCBI ]
CGAP (NCI)Hs.632188
Alternative Splicing : Fast-db (Paris)GSHG0011089
Alternative Splicing GalleryENSG00000197471
Gene ExpressionSPN [ NCBI-GEO ]   SPN [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16150 (SRS) P16150 (Uniprot)
NextProtP16150
With graphics : InterProP16150
Splice isoforms : SwissVarP16150(Swissvar)
Related proteins : CluSTrP16150
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM6693
Blocks (Seattle)P16150
Human Protein AtlasENSG00000197471
HPRD06770
IPIIPI00027430   IPI00853215   
Protein Interaction databases
DIP (DOE-UCLA)P16150
IntAct (EBI)P16150
FunCoupENSG00000197471
REACTOMESPN
Protein Interaction Database6693
BioGRIDSPN
InParanoidP16150
Interologous Interaction database P16150
IntegromeDBSPN
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SPN
SNP (GeneSNP Utah)SPN
SNP : HGBaseSPN
Genetic variants : HAPMAPSPN
Somatic Mutations in Cancer : COSMICSPN 
CONAN: Copy Number AnalysisSPN 
Mutations and Diseases : HGMDSPN
OMIM182160   
GENETests182160   
Disease Genetic AssociationSPN
Huge Navigator SPN [HugePedia]  SPN [HugeCancerGEM]
Genomic VariantsSPN  SPN [DGVbeta]
snp3D : Map Gene to Disease6693
General knowledge
Homologs : HomoloGeneSPN
Homology/Alignments : Family Browser (UCSC)SPN
Phylogenetic Trees/Animal Genes : TreeFamSPN
Chemical/Protein Interactions : CTD6693
Chemical/Pharm GKB GenePA36079
Clinical trialSPN
Cancer Resource (Charite)ENSG00000197471
Ontology : AmiGOresponse to protozoan  negative regulation of type IV hypersensitivity  uropod  transmembrane signaling receptor activity  basement membrane  extracellular space  plasma membrane  integral to plasma membrane  chemotaxis  immune response  cellular defense response  negative regulation of cell adhesion  establishment or maintenance of cell polarity  signal transduction  cell surface receptor signaling pathway  blood coagulation  external side of plasma membrane  cell surface  T cell costimulation  positive regulation of T cell proliferation  negative regulation of T cell proliferation  positive regulation of tumor necrosis factor biosynthetic process  defense response to bacterium  negative thymic T cell selection  regulation of defense response to virus  leukocyte migration  bacterial cell surface binding  
Ontology : EGO-EBIresponse to protozoan  negative regulation of type IV hypersensitivity  uropod  transmembrane signaling receptor activity  basement membrane  extracellular space  plasma membrane  integral to plasma membrane  chemotaxis  immune response  cellular defense response  negative regulation of cell adhesion  establishment or maintenance of cell polarity  signal transduction  cell surface receptor signaling pathway  blood coagulation  external side of plasma membrane  cell surface  T cell costimulation  positive regulation of T cell proliferation  negative regulation of T cell proliferation  positive regulation of tumor necrosis factor biosynthetic process  defense response to bacterium  negative thymic T cell selection  regulation of defense response to virus  leukocyte migration  bacterial cell surface binding  
Pathways : KEGGCell adhesion molecules (CAMs)
Other databases
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
PubGeneSPN
iHOPSPN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:48:29 CEST 2013
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