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SPNS2 (sphingolipid transporter 2)

Identity

Alias_namesspinster homolog 2 (Drosophila)
Other alias-
HGNC (Hugo) SPNS2
LocusID (NCBI) 124976
Atlas_Id 55322
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4498843 and ends at 4539037 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPNS2   26992
Cards
Entrez_Gene (NCBI)SPNS2  124976  sphingolipid transporter 2
Aliases
GeneCards (Weizmann)SPNS2
Ensembl hg19 (Hinxton)ENSG00000183018 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183018 [Gene_View]  chr17:4498843-4539037 [Contig_View]  SPNS2 [Vega]
ICGC DataPortalENSG00000183018
TCGA cBioPortalSPNS2
AceView (NCBI)SPNS2
Genatlas (Paris)SPNS2
WikiGenes124976
SOURCE (Princeton)SPNS2
Genetics Home Reference (NIH)SPNS2
Genomic and cartography
GoldenPath hg38 (UCSC)SPNS2  -     chr17:4498843-4539037 +  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPNS2  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblSPNS2 - 17p13.2 [CytoView hg19]  SPNS2 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBISPNS2 [Mapview hg19]  SPNS2 [Mapview hg38]
OMIM612584   
Gene and transcription
Genbank (Entrez)AB441165 BC041772 BC065221 HY309474
RefSeq transcript (Entrez)NM_001124758
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPNS2
Cluster EST : UnigeneHs.22824 [ NCBI ]
CGAP (NCI)Hs.22824
Alternative Splicing GalleryENSG00000183018
Gene ExpressionSPNS2 [ NCBI-GEO ]   SPNS2 [ EBI - ARRAY_EXPRESS ]   SPNS2 [ SEEK ]   SPNS2 [ MEM ]
Gene Expression Viewer (FireBrowse)SPNS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124976
GTEX Portal (Tissue expression)SPNS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVW8
Splice isoforms : SwissVarQ8IVW8
PhosPhoSitePlusQ8IVW8
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SPNS2
DMDM Disease mutations124976
Blocks (Seattle)SPNS2
SuperfamilyQ8IVW8
Human Protein AtlasENSG00000183018
Peptide AtlasQ8IVW8
IPIIPI00217163   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVW8
IntAct (EBI)Q8IVW8
FunCoupENSG00000183018
BioGRIDSPNS2
STRING (EMBL)SPNS2
ZODIACSPNS2
Ontologies - Pathways
QuickGOQ8IVW8
Ontology : AmiGOB cell homeostasis  regulation of humoral immune response  sphingosine-1-phosphate signaling pathway  lysosomal membrane  sphingolipid metabolic process  lipid transport  integral component of membrane  vesicle  locomotion  T cell homeostasis  sphingolipid transporter activity  regulation of eye pigmentation  lymph node development  transmembrane transport  bone development  lymphocyte migration  
Ontology : EGO-EBIB cell homeostasis  regulation of humoral immune response  sphingosine-1-phosphate signaling pathway  lysosomal membrane  sphingolipid metabolic process  lipid transport  integral component of membrane  vesicle  locomotion  T cell homeostasis  sphingolipid transporter activity  regulation of eye pigmentation  lymph node development  transmembrane transport  bone development  lymphocyte migration  
NDEx NetworkSPNS2
Atlas of Cancer Signalling NetworkSPNS2
Wikipedia pathwaysSPNS2
Orthology - Evolution
OrthoDB124976
GeneTree (enSembl)ENSG00000183018
Phylogenetic Trees/Animal Genes : TreeFamSPNS2
HOVERGENQ8IVW8
HOGENOMQ8IVW8
Homologs : HomoloGeneSPNS2
Homology/Alignments : Family Browser (UCSC)SPNS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPNS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPNS2
dbVarSPNS2
ClinVarSPNS2
1000_GenomesSPNS2 
Exome Variant ServerSPNS2
ExAC (Exome Aggregation Consortium)SPNS2 (select the gene name)
Genetic variants : HAPMAP124976
Genomic Variants (DGV)SPNS2 [DGVbeta]
DECIPHERSPNS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPNS2 
Mutations
ICGC Data PortalSPNS2 
TCGA Data PortalSPNS2 
Broad Tumor PortalSPNS2
OASIS PortalSPNS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPNS2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPNS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPNS2
DgiDB (Drug Gene Interaction Database)SPNS2
DoCM (Curated mutations)SPNS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPNS2 (select a term)
intoGenSPNS2
Cancer3DSPNS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612584   
Orphanet
MedgenSPNS2
Genetic Testing Registry SPNS2
NextProtQ8IVW8 [Medical]
TSGene124976
GENETestsSPNS2
Huge Navigator SPNS2 [HugePedia]
snp3D : Map Gene to Disease124976
BioCentury BCIQSPNS2
ClinGenSPNS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124976
Chemical/Pharm GKB GenePA162404590
Clinical trialSPNS2
Miscellaneous
canSAR (ICR)SPNS2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPNS2
EVEXSPNS2
GoPubMedSPNS2
iHOPSPNS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:38:51 CEST 2017

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