Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPNS3 (sphingolipid transporter 3 (putative))

Identity

Alias_namesspinster homolog 3 (Drosophila)
Alias_symbol (synonym)MGC29671
Other alias-
HGNC (Hugo) SPNS3
LocusID (NCBI) 201305
Atlas_Id 74193
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4433924 and ends at 4488204 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
UBE2G1 (17p13.2) / SPNS3 (17p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPNS3   28433
Cards
Entrez_Gene (NCBI)SPNS3  201305  sphingolipid transporter 3 (putative)
Aliases
GeneCards (Weizmann)SPNS3
Ensembl hg19 (Hinxton)ENSG00000182557 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182557 [Gene_View]  chr17:4433924-4488204 [Contig_View]  SPNS3 [Vega]
ICGC DataPortalENSG00000182557
TCGA cBioPortalSPNS3
AceView (NCBI)SPNS3
Genatlas (Paris)SPNS3
WikiGenes201305
SOURCE (Princeton)SPNS3
Genetics Home Reference (NIH)SPNS3
Genomic and cartography
GoldenPath hg38 (UCSC)SPNS3  -     chr17:4433924-4488204 +  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPNS3  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblSPNS3 - 17p13.2 [CytoView hg19]  SPNS3 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBISPNS3 [Mapview hg19]  SPNS3 [Mapview hg38]
OMIM611701   
Gene and transcription
Genbank (Entrez)AK172832 BC023646
RefSeq transcript (Entrez)NM_001320449 NM_182538
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPNS3
Cluster EST : UnigeneHs.657543 [ NCBI ]
CGAP (NCI)Hs.657543
Alternative Splicing GalleryENSG00000182557
Gene ExpressionSPNS3 [ NCBI-GEO ]   SPNS3 [ EBI - ARRAY_EXPRESS ]   SPNS3 [ SEEK ]   SPNS3 [ MEM ]
Gene Expression Viewer (FireBrowse)SPNS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201305
GTEX Portal (Tissue expression)SPNS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMD2
Splice isoforms : SwissVarQ6ZMD2
PhosPhoSitePlusQ6ZMD2
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SPNS3
DMDM Disease mutations201305
Blocks (Seattle)SPNS3
SuperfamilyQ6ZMD2
Human Protein AtlasENSG00000182557
Peptide AtlasQ6ZMD2
HPRD14531
IPIIPI00333141   IPI00479155   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMD2
IntAct (EBI)Q6ZMD2
FunCoupENSG00000182557
BioGRIDSPNS3
STRING (EMBL)SPNS3
ZODIACSPNS3
Ontologies - Pathways
QuickGOQ6ZMD2
Ontology : AmiGOsphingosine-1-phosphate signaling pathway  lysosomal membrane  lipid transport  integral component of membrane  vesicle  locomotion  sphingolipid transporter activity  transmembrane transport  
Ontology : EGO-EBIsphingosine-1-phosphate signaling pathway  lysosomal membrane  lipid transport  integral component of membrane  vesicle  locomotion  sphingolipid transporter activity  transmembrane transport  
NDEx NetworkSPNS3
Atlas of Cancer Signalling NetworkSPNS3
Wikipedia pathwaysSPNS3
Orthology - Evolution
OrthoDB201305
GeneTree (enSembl)ENSG00000182557
Phylogenetic Trees/Animal Genes : TreeFamSPNS3
HOVERGENQ6ZMD2
HOGENOMQ6ZMD2
Homologs : HomoloGeneSPNS3
Homology/Alignments : Family Browser (UCSC)SPNS3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPNS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPNS3
dbVarSPNS3
ClinVarSPNS3
1000_GenomesSPNS3 
Exome Variant ServerSPNS3
ExAC (Exome Aggregation Consortium)SPNS3 (select the gene name)
Genetic variants : HAPMAP201305
Genomic Variants (DGV)SPNS3 [DGVbeta]
DECIPHERSPNS3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPNS3 
Mutations
ICGC Data PortalSPNS3 
TCGA Data PortalSPNS3 
Broad Tumor PortalSPNS3
OASIS PortalSPNS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPNS3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPNS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPNS3
DgiDB (Drug Gene Interaction Database)SPNS3
DoCM (Curated mutations)SPNS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPNS3 (select a term)
intoGenSPNS3
Cancer3DSPNS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611701   
Orphanet
MedgenSPNS3
Genetic Testing Registry SPNS3
NextProtQ6ZMD2 [Medical]
TSGene201305
GENETestsSPNS3
Target ValidationSPNS3
Huge Navigator SPNS3 [HugePedia]
snp3D : Map Gene to Disease201305
BioCentury BCIQSPNS3
ClinGenSPNS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201305
Chemical/Pharm GKB GenePA162404621
Clinical trialSPNS3
Miscellaneous
canSAR (ICR)SPNS3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPNS3
EVEXSPNS3
GoPubMedSPNS3
iHOPSPNS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:01 CEST 2017

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