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SPOCD1 (SPOC domain containing 1)

Identity

Other aliasPPP1R146
HGNC (Hugo) SPOCD1
LocusID (NCBI) 90853
Atlas_Id 57138
Location 1p35.2  [Link to chromosome band 1p35]
Location_base_pair Starts at 31790423 and ends at 31794216 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADGRB2 (1p35.2) / SPOCD1 (1p35.2)LOC100134229 () / SPOCD1 (1p35.2)USP19 (3p21.31) / SPOCD1 (1p35.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPOCD1   26338
Cards
Entrez_Gene (NCBI)SPOCD1  90853  SPOC domain containing 1
AliasesPPP1R146
GeneCards (Weizmann)SPOCD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:31790423-31794216 [Contig_View]  SPOCD1 [Vega]
TCGA cBioPortalSPOCD1
AceView (NCBI)SPOCD1
Genatlas (Paris)SPOCD1
WikiGenes90853
SOURCE (Princeton)SPOCD1
Genetics Home Reference (NIH)SPOCD1
Genomic and cartography
GoldenPath hg38 (UCSC)SPOCD1  -     chr1:31790423-31794216 -  1p35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPOCD1  -     1p35.2   [Description]    (hg19-Feb_2009)
EnsemblSPOCD1 - 1p35.2 [CytoView hg19]  SPOCD1 - 1p35.2 [CytoView hg38]
Mapping of homologs : NCBISPOCD1 [Mapview hg19]  SPOCD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058077 AK091016 AK095829 AK096192 AK097227
RefSeq transcript (Entrez)NM_001281987 NM_001281988 NM_144569
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPOCD1
Cluster EST : UnigeneHs.62604 [ NCBI ]
CGAP (NCI)Hs.62604
Gene ExpressionSPOCD1 [ NCBI-GEO ]   SPOCD1 [ EBI - ARRAY_EXPRESS ]   SPOCD1 [ SEEK ]   SPOCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPOCD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90853
GTEX Portal (Tissue expression)SPOCD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMY3
Splice isoforms : SwissVarQ6ZMY3
PhosPhoSitePlusQ6ZMY3
Domaine pattern : Prosite (Expaxy)TFIIS_CENTRAL (PS51321)   
Domains : Interpro (EBI)SPOC_C    TFIIS_cen_dom   
Domain families : Pfam (Sanger)SPOC (PF07744)    TFIIS_M (PF07500)   
Domain families : Pfam (NCBI)pfam07744    pfam07500   
Domain families : Smart (EMBL)TFS2M (SM00510)  
Conserved Domain (NCBI)SPOCD1
DMDM Disease mutations90853
Blocks (Seattle)SPOCD1
SuperfamilyQ6ZMY3
Peptide AtlasQ6ZMY3
IPIIPI00845481   IPI00845378   IPI00478771   IPI00845517   IPI00827924   IPI00953679   IPI00807404   IPI00179918   IPI00977290   IPI00980949   IPI01015676   IPI00984590   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMY3
IntAct (EBI)Q6ZMY3
BioGRIDSPOCD1
STRING (EMBL)SPOCD1
ZODIACSPOCD1
Ontologies - Pathways
QuickGOQ6ZMY3
Ontology : AmiGOtranscription, DNA-templated  negative regulation of phosphatase activity  
Ontology : EGO-EBItranscription, DNA-templated  negative regulation of phosphatase activity  
NDEx NetworkSPOCD1
Atlas of Cancer Signalling NetworkSPOCD1
Wikipedia pathwaysSPOCD1
Orthology - Evolution
OrthoDB90853
Phylogenetic Trees/Animal Genes : TreeFamSPOCD1
HOVERGENQ6ZMY3
HOGENOMQ6ZMY3
Homologs : HomoloGeneSPOCD1
Homology/Alignments : Family Browser (UCSC)SPOCD1
Gene fusions - Rearrangements
Fusion: Tumor Portal SPOCD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPOCD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPOCD1
dbVarSPOCD1
ClinVarSPOCD1
1000_GenomesSPOCD1 
Exome Variant ServerSPOCD1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP90853
Genomic Variants (DGV)SPOCD1 [DGVbeta]
DECIPHERSPOCD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPOCD1 
Mutations
ICGC Data PortalSPOCD1 
TCGA Data PortalSPOCD1 
Broad Tumor PortalSPOCD1
OASIS PortalSPOCD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPOCD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPOCD1
BioMutasearch SPOCD1
DgiDB (Drug Gene Interaction Database)SPOCD1
DoCM (Curated mutations)SPOCD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPOCD1 (select a term)
intoGenSPOCD1
Cancer3DSPOCD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPOCD1
Genetic Testing Registry SPOCD1
NextProtQ6ZMY3 [Medical]
TSGene90853
GENETestsSPOCD1
Target ValidationSPOCD1
Huge Navigator SPOCD1 [HugePedia]
snp3D : Map Gene to Disease90853
BioCentury BCIQSPOCD1
ClinGenSPOCD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90853
Chemical/Pharm GKB GenePA134930231
Clinical trialSPOCD1
Miscellaneous
canSAR (ICR)SPOCD1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPOCD1
EVEXSPOCD1
GoPubMedSPOCD1
iHOPSPOCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:12:27 CET 2017

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