SPOCD1 (SPOC domain containing 1)

2017-10-01  

Identity

HGNC
SPOCD1
LOCATION
1p35.2
LOCUSID
90853
ALIAS
PPP1R146
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 90853
HGNC: 26338
Ensembl: ENSG00000134668

Variants:

dbSNP: 90853
ClinVar: 90853
TCGA: ENSG00000134668
COSMIC: SPOCD1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000134668ENST00000257100Q6ZMY3
ENSG00000134668ENST00000360482Q6ZMY3
ENSG00000134668ENST00000452755E9PPM7
ENSG00000134668ENST00000525930E9PQH7
ENSG00000134668ENST00000528579H0YF46
ENSG00000134668ENST00000528791E9PKC3
ENSG00000134668ENST00000529396E9PMX0
ENSG00000134668ENST00000533231Q6ZMY3

Expression (GTEx)

0
5
10
15
20
25
30
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
282460152017Exome Array Analysis Identifies Variants in SPOCD1 and BTN3A2 That Affect Risk for Gastric Cancer.11
280052672017Human gingiva transcriptome during wound healing.6
292573092018SPOCD1 promotes cell proliferation and inhibits cell apoptosis in human osteosarcoma.3

Citation

Dessen P

SPOCD1 (SPOC domain containing 1)

Atlas Genet Cytogenet Oncol Haematol. 2017-10-01

Online version: http://atlasgeneticsoncology.org/gene/57138/spocd1