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SPOCD1 (SPOC domain containing 1)

Identity

Alias (NCBI)PPP1R146
HGNC (Hugo) SPOCD1
HGNC Alias symbFLJ25348
PPP1R146
HGNC Alias nameprotein phosphatase 1, regulatory subunit 146
LocusID (NCBI) 90853
Atlas_Id 57138
Location 1p35.2  [Link to chromosome band 1p35]
Location_base_pair Starts at 31790422 and ends at 31816051 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADGRB2 (1p35.2) / SPOCD1 (1p35.2)LOC100134229 () / SPOCD1 (1p35.2)USP19 (3p21.31) / SPOCD1 (1p35.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPOCD1   26338
Cards
Entrez_Gene (NCBI)SPOCD1    SPOC domain containing 1
AliasesPPP1R146
GeneCards (Weizmann)SPOCD1
Ensembl hg19 (Hinxton)ENSG00000134668 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134668 [Gene_View]  ENSG00000134668 [Sequence]  chr1:31790422-31816051 [Contig_View]  SPOCD1 [Vega]
ICGC DataPortalENSG00000134668
TCGA cBioPortalSPOCD1
AceView (NCBI)SPOCD1
Genatlas (Paris)SPOCD1
SOURCE (Princeton)SPOCD1
Genetics Home Reference (NIH)SPOCD1
Genomic and cartography
GoldenPath hg38 (UCSC)SPOCD1  -     chr1:31790422-31816051 -  1p35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPOCD1  -     1p35.2   [Description]    (hg19-Feb_2009)
GoldenPathSPOCD1 - 1p35.2 [CytoView hg19]  SPOCD1 - 1p35.2 [CytoView hg38]
ImmunoBaseENSG00000134668
Genome Data Viewer NCBISPOCD1 [Mapview hg19]  
OMIM619038   
Gene and transcription
Genbank (Entrez)AK058077 AK091016 AK095829 AK096192 AK097227
RefSeq transcript (Entrez)NM_001281987 NM_001281988 NM_001394397 NM_001394398 NM_001394399 NM_144569
Consensus coding sequences : CCDS (NCBI)SPOCD1
Gene ExpressionSPOCD1 [ NCBI-GEO ]   SPOCD1 [ EBI - ARRAY_EXPRESS ]   SPOCD1 [ SEEK ]   SPOCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPOCD1 [ Firebrowse - Broad ]
GenevisibleExpression of SPOCD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90853
GTEX Portal (Tissue expression)SPOCD1
Human Protein AtlasENSG00000134668-SPOCD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMY3
PhosPhoSitePlusQ6ZMY3
Domaine pattern : Prosite (Expaxy)TFIIS_CENTRAL (PS51321)   
Domains : Interpro (EBI)SPOC_C    TFIIS_cen_dom    TFIIS_cen_dom_sf   
Domain families : Pfam (Sanger)SPOC (PF07744)    TFIIS_M (PF07500)   
Domain families : Pfam (NCBI)pfam07744    pfam07500   
Domain families : Smart (EMBL)TFS2M (SM00510)  
Conserved Domain (NCBI)SPOCD1
SuperfamilyQ6ZMY3
AlphaFold pdb e-kbQ6ZMY3   
Human Protein Atlas [tissue]ENSG00000134668-SPOCD1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMY3
IntAct (EBI)Q6ZMY3
BioGRIDSPOCD1
STRING (EMBL)SPOCD1
ZODIACSPOCD1
Ontologies - Pathways
QuickGOQ6ZMY3
Ontology : AmiGOnucleus  chromosome  DNA methylation  transcription, DNA-templated  spermatogenesis  negative regulation of transposition  cell differentiation  gene silencing by RNA  
Ontology : EGO-EBInucleus  chromosome  DNA methylation  transcription, DNA-templated  spermatogenesis  negative regulation of transposition  cell differentiation  gene silencing by RNA  
NDEx NetworkSPOCD1
Atlas of Cancer Signalling NetworkSPOCD1
Wikipedia pathwaysSPOCD1
Orthology - Evolution
OrthoDB90853
GeneTree (enSembl)ENSG00000134668
Phylogenetic Trees/Animal Genes : TreeFamSPOCD1
Homologs : HomoloGeneSPOCD1
Homology/Alignments : Family Browser (UCSC)SPOCD1
Gene fusions - Rearrangements
Fusion : QuiverSPOCD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPOCD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPOCD1
dbVarSPOCD1
ClinVarSPOCD1
MonarchSPOCD1
1000_GenomesSPOCD1 
Exome Variant ServerSPOCD1
GNOMAD BrowserENSG00000134668
Varsome BrowserSPOCD1
ACMGSPOCD1 variants
VarityQ6ZMY3
Genomic Variants (DGV)SPOCD1 [DGVbeta]
DECIPHERSPOCD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPOCD1 
Mutations
ICGC Data PortalSPOCD1 
TCGA Data PortalSPOCD1 
Broad Tumor PortalSPOCD1
OASIS PortalSPOCD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPOCD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPOCD1
Mutations and Diseases : HGMDSPOCD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPOCD1
DgiDB (Drug Gene Interaction Database)SPOCD1
DoCM (Curated mutations)SPOCD1
CIViC (Clinical Interpretations of Variants in Cancer)SPOCD1
Cancer3DSPOCD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM619038   
Orphanet
DisGeNETSPOCD1
MedgenSPOCD1
Genetic Testing Registry SPOCD1
NextProtQ6ZMY3 [Medical]
GENETestsSPOCD1
Target ValidationSPOCD1
Huge Navigator SPOCD1 [HugePedia]
ClinGenSPOCD1
Clinical trials, drugs, therapy
MyCancerGenomeSPOCD1
Protein Interactions : CTDSPOCD1
Pharm GKB GenePA134930231
PharosQ6ZMY3
Clinical trialSPOCD1
Miscellaneous
canSAR (ICR)SPOCD1
HarmonizomeSPOCD1
DataMed IndexSPOCD1
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPOCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:32:56 CEST 2021

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