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SPOCK3 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3)

Identity

Alias (NCBI)HSAJ1454
TES-3
TICN3
HGNC (Hugo) SPOCK3
HGNC Alias symbtestican-3
HGNC Previous namesparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3
 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3
LocusID (NCBI) 50859
Atlas_Id 42377
Location 4q32.3  [Link to chromosome band 4q32]
Location_base_pair Starts at 166733385 and ends at 167234590 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNTNAP2 (7q35) / SPOCK3 (4q32.3)SPOCK3 (4q32.3) / ADCY2 (5p15.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SPOCK3   13565
Cards
Entrez_Gene (NCBI)SPOCK3    SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3
AliasesHSAJ1454; TES-3; TICN3
GeneCards (Weizmann)SPOCK3
Ensembl hg19 (Hinxton)ENSG00000196104 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196104 [Gene_View]  ENSG00000196104 [Sequence]  chr4:166733385-167234590 [Contig_View]  SPOCK3 [Vega]
ICGC DataPortalENSG00000196104
TCGA cBioPortalSPOCK3
AceView (NCBI)SPOCK3
Genatlas (Paris)SPOCK3
SOURCE (Princeton)SPOCK3
Genetics Home Reference (NIH)SPOCK3
Genomic and cartography
GoldenPath hg38 (UCSC)SPOCK3  -     chr4:166733385-167234590 -  4q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPOCK3  -     4q32.3   [Description]    (hg19-Feb_2009)
GoldenPathSPOCK3 - 4q32.3 [CytoView hg19]  SPOCK3 - 4q32.3 [CytoView hg38]
ImmunoBaseENSG00000196104
Genome Data Viewer NCBISPOCK3 [Mapview hg19]  
OMIM607989   
Gene and transcription
Genbank (Entrez)AB056866 AJ001454 AK091078 AK294293 AK294346
RefSeq transcript (Entrez)NM_001040159 NM_001204352 NM_001204353 NM_001204354 NM_001204355 NM_001204356 NM_001204358 NM_001204359 NM_001251967 NM_016950
Consensus coding sequences : CCDS (NCBI)SPOCK3
Gene ExpressionSPOCK3 [ NCBI-GEO ]   SPOCK3 [ EBI - ARRAY_EXPRESS ]   SPOCK3 [ SEEK ]   SPOCK3 [ MEM ]
Gene Expression Viewer (FireBrowse)SPOCK3 [ Firebrowse - Broad ]
GenevisibleExpression of SPOCK3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50859
GTEX Portal (Tissue expression)SPOCK3
Human Protein AtlasENSG00000196104-SPOCK3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPOCK3
Human Protein Atlas [tissue]ENSG00000196104-SPOCK3 [tissue]
HPRD12147
Protein Interaction databases
BioGRIDSPOCK3
STRING (EMBL)SPOCK3
ZODIACSPOCK3
Ontologies - Pathways
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPOCK3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:32:57 CEST 2021

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