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SPOPL (speckle type BTB/POZ protein like)

Identity

Alias_namesspeckle-type POZ protein-like
Alias_symbol (synonym)BTBD33
Other alias
HGNC (Hugo) SPOPL
LocusID (NCBI) 339745
Atlas_Id 74196
Location 2q22.1  [Link to chromosome band 2q22]
Location_base_pair Starts at 138501780 and ends at 138573236 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPOPL   27934
Cards
Entrez_Gene (NCBI)SPOPL  339745  speckle type BTB/POZ protein like
AliasesBTBD33
GeneCards (Weizmann)SPOPL
Ensembl hg19 (Hinxton)ENSG00000144228 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144228 [Gene_View]  chr2:138501780-138573236 [Contig_View]  SPOPL [Vega]
ICGC DataPortalENSG00000144228
TCGA cBioPortalSPOPL
AceView (NCBI)SPOPL
Genatlas (Paris)SPOPL
WikiGenes339745
SOURCE (Princeton)SPOPL
Genetics Home Reference (NIH)SPOPL
Genomic and cartography
GoldenPath hg38 (UCSC)SPOPL  -     chr2:138501780-138573236 +  2q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPOPL  -     2q22.1   [Description]    (hg19-Feb_2009)
EnsemblSPOPL - 2q22.1 [CytoView hg19]  SPOPL - 2q22.1 [CytoView hg38]
Mapping of homologs : NCBISPOPL [Mapview hg19]  SPOPL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA737682 AK094583 AK293850 BC071613 BX538143
RefSeq transcript (Entrez)NM_001001664
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPOPL
Cluster EST : UnigeneHs.333297 [ NCBI ]
CGAP (NCI)Hs.333297
Alternative Splicing GalleryENSG00000144228
Gene ExpressionSPOPL [ NCBI-GEO ]   SPOPL [ EBI - ARRAY_EXPRESS ]   SPOPL [ SEEK ]   SPOPL [ MEM ]
Gene Expression Viewer (FireBrowse)SPOPL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339745
GTEX Portal (Tissue expression)SPOPL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IQ16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IQ16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IQ16
Splice isoforms : SwissVarQ6IQ16
PhosPhoSitePlusQ6IQ16
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    MATH (PS50144)   
Domains : Interpro (EBI)BTB/POZ_dom    MATH/TRAF_dom    SKP1/BTB/POZ    SPOP_C    TRAF-like   
Domain families : Pfam (Sanger)BTB (PF00651)    MATH (PF00917)   
Domain families : Pfam (NCBI)pfam00651    pfam00917   
Domain families : Smart (EMBL)BTB (SM00225)  MATH (SM00061)  
Conserved Domain (NCBI)SPOPL
DMDM Disease mutations339745
Blocks (Seattle)SPOPL
SuperfamilyQ6IQ16
Human Protein AtlasENSG00000144228
Peptide AtlasQ6IQ16
HPRD11261
IPIIPI00419928   IPI00917658   IPI00916577   
Protein Interaction databases
DIP (DOE-UCLA)Q6IQ16
IntAct (EBI)Q6IQ16
FunCoupENSG00000144228
BioGRIDSPOPL
STRING (EMBL)SPOPL
ZODIACSPOPL
Ontologies - Pathways
QuickGOQ6IQ16
Ontology : AmiGOprotein binding  nucleus  cytoplasm  SCF ubiquitin ligase complex  regulation of proteolysis  negative regulation of protein ubiquitination  Cul3-RING ubiquitin ligase complex  ubiquitin protein ligase binding  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  SCF ubiquitin ligase complex  regulation of proteolysis  negative regulation of protein ubiquitination  Cul3-RING ubiquitin ligase complex  ubiquitin protein ligase binding  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  
NDEx NetworkSPOPL
Atlas of Cancer Signalling NetworkSPOPL
Wikipedia pathwaysSPOPL
Orthology - Evolution
OrthoDB339745
GeneTree (enSembl)ENSG00000144228
Phylogenetic Trees/Animal Genes : TreeFamSPOPL
HOVERGENQ6IQ16
HOGENOMQ6IQ16
Homologs : HomoloGeneSPOPL
Homology/Alignments : Family Browser (UCSC)SPOPL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPOPL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPOPL
dbVarSPOPL
ClinVarSPOPL
1000_GenomesSPOPL 
Exome Variant ServerSPOPL
ExAC (Exome Aggregation Consortium)SPOPL (select the gene name)
Genetic variants : HAPMAP339745
Genomic Variants (DGV)SPOPL [DGVbeta]
DECIPHERSPOPL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPOPL 
Mutations
ICGC Data PortalSPOPL 
TCGA Data PortalSPOPL 
Broad Tumor PortalSPOPL
OASIS PortalSPOPL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPOPL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPOPL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPOPL
DgiDB (Drug Gene Interaction Database)SPOPL
DoCM (Curated mutations)SPOPL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPOPL (select a term)
intoGenSPOPL
Cancer3DSPOPL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPOPL
Genetic Testing Registry SPOPL
NextProtQ6IQ16 [Medical]
TSGene339745
GENETestsSPOPL
Target ValidationSPOPL
Huge Navigator SPOPL [HugePedia]
snp3D : Map Gene to Disease339745
BioCentury BCIQSPOPL
ClinGenSPOPL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339745
Chemical/Pharm GKB GenePA162404650
Clinical trialSPOPL
Miscellaneous
canSAR (ICR)SPOPL (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPOPL
EVEXSPOPL
GoPubMedSPOPL
iHOPSPOPL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:01 CEST 2017

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