SPOUT1 (SPOUT domain containing methyltransferase 1)

Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPOUT1 (SPOUT domain containing methyltransferase 1)

Identity

Other aliasC9orf114
CENP-32
HSPC109
HGNC (Hugo) SPOUT1
LocusID (NCBI) 51490
Atlas_Id 78792
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128819651 and ends at 128829821 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPOUT1   26933
Cards
Entrez_Gene (NCBI)SPOUT1  51490  SPOUT domain containing methyltransferase 1
AliasesC9orf114; CENP-32; HSPC109
GeneCards (Weizmann)SPOUT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:128819651-128829821 [Contig_View]  SPOUT1 [Vega]
TCGA cBioPortalSPOUT1
AceView (NCBI)SPOUT1
Genatlas (Paris)SPOUT1
WikiGenes51490
SOURCE (Princeton)SPOUT1
Genetics Home Reference (NIH)SPOUT1
Genomic and cartography
GoldenPath hg38 (UCSC)SPOUT1  -     chr9:128819651-128829821 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPOUT1  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblSPOUT1 - 9q34.11 [CytoView hg19]  SPOUT1 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBISPOUT1 [Mapview hg19]  SPOUT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161459 AK303563 AL110193 BC010579 BC021273
RefSeq transcript (Entrez)NM_016390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPOUT1
Cluster EST : UnigeneHs.224137 [ NCBI ]
CGAP (NCI)Hs.224137
Gene ExpressionSPOUT1 [ NCBI-GEO ]   SPOUT1 [ EBI - ARRAY_EXPRESS ]   SPOUT1 [ SEEK ]   SPOUT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPOUT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51490
GTEX Portal (Tissue expression)SPOUT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T280   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T280  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T280
Splice isoforms : SwissVarQ5T280
PhosPhoSitePlusQ5T280
Domains : Interpro (EBI)Alpha/beta_knot_MTases    NA-bd_OB-fold    Put_MeTrfase    tRNA_m1G_MTases_N   
Domain families : Pfam (Sanger)Methyltrn_RNA_3 (PF02598)   
Domain families : Pfam (NCBI)pfam02598   
Conserved Domain (NCBI)SPOUT1
DMDM Disease mutations51490
Blocks (Seattle)SPOUT1
PDB (SRS)4RG1   
PDB (PDBSum)4RG1   
PDB (IMB)4RG1   
PDB (RSDB)4RG1   
Structural Biology KnowledgeBase4RG1   
SCOP (Structural Classification of Proteins)4RG1   
CATH (Classification of proteins structures)4RG1   
SuperfamilyQ5T280
Peptide AtlasQ5T280
HPRD12935
IPIIPI00844014   IPI00418229   
Protein Interaction databases
DIP (DOE-UCLA)Q5T280
IntAct (EBI)Q5T280
BioGRIDSPOUT1
STRING (EMBL)SPOUT1
ZODIACSPOUT1
Ontologies - Pathways
QuickGOQ5T280
Ontology : AmiGOkinetochore  condensed chromosome kinetochore  RNA binding  cellular_component  cell cycle  biological_process  methyltransferase activity  spindle pole centrosome  methylation  cell division  maintenance of centrosome location  mitotic spindle  
Ontology : EGO-EBIkinetochore  condensed chromosome kinetochore  RNA binding  cellular_component  cell cycle  biological_process  methyltransferase activity  spindle pole centrosome  methylation  cell division  maintenance of centrosome location  mitotic spindle  
NDEx NetworkSPOUT1
Atlas of Cancer Signalling NetworkSPOUT1
Wikipedia pathwaysSPOUT1
Orthology - Evolution
OrthoDB51490
Phylogenetic Trees/Animal Genes : TreeFamSPOUT1
HOVERGENQ5T280
HOGENOMQ5T280
Homologs : HomoloGeneSPOUT1
Homology/Alignments : Family Browser (UCSC)SPOUT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPOUT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPOUT1
dbVarSPOUT1
ClinVarSPOUT1
1000_GenomesSPOUT1 
Exome Variant ServerSPOUT1
ExAC (Exome Aggregation Consortium)SPOUT1 (select the gene name)
Genetic variants : HAPMAP51490
Genomic Variants (DGV)SPOUT1 [DGVbeta]
DECIPHERSPOUT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPOUT1 
Mutations
ICGC Data PortalSPOUT1 
TCGA Data PortalSPOUT1 
Broad Tumor PortalSPOUT1
OASIS PortalSPOUT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPOUT1
BioMutasearch SPOUT1
DgiDB (Drug Gene Interaction Database)SPOUT1
DoCM (Curated mutations)SPOUT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPOUT1 (select a term)
intoGenSPOUT1
Cancer3DSPOUT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPOUT1
Genetic Testing Registry SPOUT1
NextProtQ5T280 [Medical]
TSGene51490
GENETestsSPOUT1
Target ValidationSPOUT1
Huge Navigator SPOUT1 [HugePedia]
snp3D : Map Gene to Disease51490
BioCentury BCIQSPOUT1
ClinGenSPOUT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51490
Chemical/Pharm GKB GenePA134958095
Clinical trialSPOUT1
Miscellaneous
canSAR (ICR)SPOUT1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPOUT1
EVEXSPOUT1
GoPubMedSPOUT1
iHOPSPOUT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:24 CEST 2017

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