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SPRED3 (sprouty related EVH1 domain containing 3)

Identity

Other aliasEve-3
spred-3
HGNC (Hugo) SPRED3
LocusID (NCBI) 399473
Atlas_Id 56381
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 38390200 and ends at 38399883 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRED3   31041
Cards
Entrez_Gene (NCBI)SPRED3  399473  sprouty related EVH1 domain containing 3
AliasesEve-3; spred-3
GeneCards (Weizmann)SPRED3
Ensembl hg19 (Hinxton)ENSG00000188766 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188766 [Gene_View]  chr19:38390200-38399883 [Contig_View]  SPRED3 [Vega]
ICGC DataPortalENSG00000188766
TCGA cBioPortalSPRED3
AceView (NCBI)SPRED3
Genatlas (Paris)SPRED3
WikiGenes399473
SOURCE (Princeton)SPRED3
Genetics Home Reference (NIH)SPRED3
Genomic and cartography
GoldenPath hg38 (UCSC)SPRED3  -     chr19:38390200-38399883 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPRED3  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblSPRED3 - 19q13.2 [CytoView hg19]  SPRED3 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBISPRED3 [Mapview hg19]  SPRED3 [Mapview hg38]
OMIM609293   
Gene and transcription
Genbank (Entrez)AI028379 AI871425 BC151136 BF983829 DQ323927
RefSeq transcript (Entrez)NM_001039616 NM_001042522
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPRED3
Cluster EST : UnigeneHs.196011 [ NCBI ]
CGAP (NCI)Hs.196011
Alternative Splicing GalleryENSG00000188766
Gene ExpressionSPRED3 [ NCBI-GEO ]   SPRED3 [ EBI - ARRAY_EXPRESS ]   SPRED3 [ SEEK ]   SPRED3 [ MEM ]
Gene Expression Viewer (FireBrowse)SPRED3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399473
GTEX Portal (Tissue expression)SPRED3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2MJR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2MJR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2MJR0
Splice isoforms : SwissVarQ2MJR0
PhosPhoSitePlusQ2MJR0
Domaine pattern : Prosite (Expaxy)KBD (PS51488)    SPR (PS51227)    WH1 (PS50229)   
Domains : Interpro (EBI)KBD    PH_dom-like    Sprouty    WH1/EVH1_dom   
Domain families : Pfam (Sanger)Sprouty (PF05210)    WH1 (PF00568)   
Domain families : Pfam (NCBI)pfam05210    pfam00568   
Domain families : Smart (EMBL)WH1 (SM00461)  
Conserved Domain (NCBI)SPRED3
DMDM Disease mutations399473
Blocks (Seattle)SPRED3
SuperfamilyQ2MJR0
Human Protein AtlasENSG00000188766
Peptide AtlasQ2MJR0
IPIIPI00397716   IPI00783043   
Protein Interaction databases
DIP (DOE-UCLA)Q2MJR0
IntAct (EBI)Q2MJR0
FunCoupENSG00000188766
BioGRIDSPRED3
STRING (EMBL)SPRED3
ZODIACSPRED3
Ontologies - Pathways
QuickGOQ2MJR0
Ontology : AmiGOmulticellular organism development  regulation of signal transduction  membrane  
Ontology : EGO-EBImulticellular organism development  regulation of signal transduction  membrane  
Pathways : KEGGJak-STAT signaling pathway   
NDEx NetworkSPRED3
Atlas of Cancer Signalling NetworkSPRED3
Wikipedia pathwaysSPRED3
Orthology - Evolution
OrthoDB399473
GeneTree (enSembl)ENSG00000188766
Phylogenetic Trees/Animal Genes : TreeFamSPRED3
HOVERGENQ2MJR0
HOGENOMQ2MJR0
Homologs : HomoloGeneSPRED3
Homology/Alignments : Family Browser (UCSC)SPRED3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPRED3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPRED3
dbVarSPRED3
ClinVarSPRED3
1000_GenomesSPRED3 
Exome Variant ServerSPRED3
ExAC (Exome Aggregation Consortium)SPRED3 (select the gene name)
Genetic variants : HAPMAP399473
Genomic Variants (DGV)SPRED3 [DGVbeta]
DECIPHERSPRED3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPRED3 
Mutations
ICGC Data PortalSPRED3 
TCGA Data PortalSPRED3 
Broad Tumor PortalSPRED3
OASIS PortalSPRED3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPRED3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPRED3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPRED3
DgiDB (Drug Gene Interaction Database)SPRED3
DoCM (Curated mutations)SPRED3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPRED3 (select a term)
intoGenSPRED3
Cancer3DSPRED3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609293   
Orphanet
MedgenSPRED3
Genetic Testing Registry SPRED3
NextProtQ2MJR0 [Medical]
TSGene399473
GENETestsSPRED3
Huge Navigator SPRED3 [HugePedia]
snp3D : Map Gene to Disease399473
BioCentury BCIQSPRED3
ClinGenSPRED3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399473
Chemical/Pharm GKB GenePA134871045
Clinical trialSPRED3
Miscellaneous
canSAR (ICR)SPRED3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRED3
EVEXSPRED3
GoPubMedSPRED3
iHOPSPRED3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:38:55 CEST 2017

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