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SPRN (shadow of prion protein)

Identity

Alias (NCBI)SHADOO
SHO
bA108K14.1
HGNC (Hugo) SPRN
HGNC Alias symbShadoo
Sprn
bA108K14.1
FLJ41197
HGNC Alias namehypothetical protein BC004409
LocusID (NCBI) 503542
Atlas_Id 74202
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 133420666 and ends at 133424617 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPRN   16871
Cards
Entrez_Gene (NCBI)SPRN    shadow of prion protein
AliasesSHADOO; SHO; bA108K14.1
GeneCards (Weizmann)SPRN
Ensembl hg19 (Hinxton)ENSG00000203772 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203772 [Gene_View]  ENSG00000203772 [Sequence]  chr10:133420666-133424617 [Contig_View]  SPRN [Vega]
ICGC DataPortalENSG00000203772
TCGA cBioPortalSPRN
AceView (NCBI)SPRN
Genatlas (Paris)SPRN
SOURCE (Princeton)SPRN
Genetics Home Reference (NIH)SPRN
Genomic and cartography
GoldenPath hg38 (UCSC)SPRN  -     chr10:133420666-133424617 -  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPRN  -     10q26.3   [Description]    (hg19-Feb_2009)
GoldenPathSPRN - 10q26.3 [CytoView hg19]  SPRN - 10q26.3 [CytoView hg38]
ImmunoBaseENSG00000203772
Genome Data Viewer NCBISPRN [Mapview hg19]  
OMIM610447   
Gene and transcription
Genbank (Entrez)AK123191 AW293555 BC040198 CD580523
RefSeq transcript (Entrez)NM_001012508 NM_001391974
Consensus coding sequences : CCDS (NCBI)SPRN
Gene ExpressionSPRN [ NCBI-GEO ]   SPRN [ EBI - ARRAY_EXPRESS ]   SPRN [ SEEK ]   SPRN [ MEM ]
Gene Expression Viewer (FireBrowse)SPRN [ Firebrowse - Broad ]
GenevisibleExpression of SPRN in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)503542
GTEX Portal (Tissue expression)SPRN
Human Protein AtlasENSG00000203772-SPRN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BIV9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BIV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BIV9
PhosPhoSitePlusQ5BIV9
Domains : Interpro (EBI)Shadoo   
Domain families : Pfam (Sanger)Shadoo (PF14999)   
Domain families : Pfam (NCBI)pfam14999   
Conserved Domain (NCBI)SPRN
SuperfamilyQ5BIV9
AlphaFold pdb e-kbQ5BIV9   
Human Protein Atlas [tissue]ENSG00000203772-SPRN [tissue]
HPRD18499
Protein Interaction databases
DIP (DOE-UCLA)Q5BIV9
IntAct (EBI)Q5BIV9
BioGRIDSPRN
STRING (EMBL)SPRN
ZODIACSPRN
Ontologies - Pathways
QuickGOQ5BIV9
Ontology : AmiGOnucleic acid binding  extracellular region  nucleus  nucleolus  cytosol  plasma membrane  protein import into nucleus  anchored component of membrane  vesicle  
Ontology : EGO-EBInucleic acid binding  extracellular region  nucleus  nucleolus  cytosol  plasma membrane  protein import into nucleus  anchored component of membrane  vesicle  
NDEx NetworkSPRN
Atlas of Cancer Signalling NetworkSPRN
Wikipedia pathwaysSPRN
Orthology - Evolution
OrthoDB503542
GeneTree (enSembl)ENSG00000203772
Phylogenetic Trees/Animal Genes : TreeFamSPRN
Homologs : HomoloGeneSPRN
Homology/Alignments : Family Browser (UCSC)SPRN
Gene fusions - Rearrangements
Fusion : QuiverSPRN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPRN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPRN
dbVarSPRN
ClinVarSPRN
MonarchSPRN
1000_GenomesSPRN 
Exome Variant ServerSPRN
GNOMAD BrowserENSG00000203772
Varsome BrowserSPRN
ACMGSPRN variants
VarityQ5BIV9
Genomic Variants (DGV)SPRN [DGVbeta]
DECIPHERSPRN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPRN 
Mutations
ICGC Data PortalSPRN 
TCGA Data PortalSPRN 
Broad Tumor PortalSPRN
OASIS PortalSPRN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPRN  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPRN
Mutations and Diseases : HGMDSPRN
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPRN
DgiDB (Drug Gene Interaction Database)SPRN
DoCM (Curated mutations)SPRN
CIViC (Clinical Interpretations of Variants in Cancer)SPRN
Cancer3DSPRN
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610447   
Orphanet
DisGeNETSPRN
MedgenSPRN
Genetic Testing Registry SPRN
NextProtQ5BIV9 [Medical]
GENETestsSPRN
Target ValidationSPRN
Huge Navigator SPRN [HugePedia]
ClinGenSPRN
Clinical trials, drugs, therapy
MyCancerGenomeSPRN
Protein Interactions : CTDSPRN
Pharm GKB GenePA142670876
PharosQ5BIV9
Clinical trialSPRN
Miscellaneous
canSAR (ICR)SPRN
HarmonizomeSPRN
DataMed IndexSPRN
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPRN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:04 CEST 2021

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