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SPRN (shadow of prion protein homolog (zebrafish))

Identity

Alias_symbol (synonym)Shadoo
Sprn
bA108K14.1
FLJ41197
Other aliasSHADOO
SHO
HGNC (Hugo) SPRN
LocusID (NCBI) 503542
Atlas_Id 74202
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 135234170 and ends at 135238121 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRN   16871
Cards
Entrez_Gene (NCBI)SPRN  503542  shadow of prion protein homolog (zebrafish)
AliasesSHADOO; SHO; bA108K14.1
GeneCards (Weizmann)SPRN
Ensembl hg19 (Hinxton)ENSG00000203772 [Gene_View]  chr10:135234170-135238121 [Contig_View]  SPRN [Vega]
Ensembl hg38 (Hinxton)ENSG00000203772 [Gene_View]  chr10:135234170-135238121 [Contig_View]  SPRN [Vega]
ICGC DataPortalENSG00000203772
TCGA cBioPortalSPRN
AceView (NCBI)SPRN
Genatlas (Paris)SPRN
WikiGenes503542
SOURCE (Princeton)SPRN
Genetics Home Reference (NIH)SPRN
Genomic and cartography
GoldenPath hg19 (UCSC)SPRN  -     chr10:135234170-135238121 -  10q26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPRN  -     10q26.3   [Description]    (hg38-Dec_2013)
EnsemblSPRN - 10q26.3 [CytoView hg19]  SPRN - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBISPRN [Mapview hg19]  SPRN [Mapview hg38]
OMIM610447   
Gene and transcription
Genbank (Entrez)AK123191 AW293555 BC040198 CD580523
RefSeq transcript (Entrez)NM_001012508
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929377
Consensus coding sequences : CCDS (NCBI)SPRN
Cluster EST : UnigeneHs.64968 [ NCBI ]
CGAP (NCI)Hs.64968
Alternative Splicing GalleryENSG00000203772
Gene ExpressionSPRN [ NCBI-GEO ]   SPRN [ EBI - ARRAY_EXPRESS ]   SPRN [ SEEK ]   SPRN [ MEM ]
Gene Expression Viewer (FireBrowse)SPRN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)503542
GTEX Portal (Tissue expression)SPRN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BIV9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BIV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BIV9
Splice isoforms : SwissVarQ5BIV9
PhosPhoSitePlusQ5BIV9
Domains : Interpro (EBI)Shadoo   
Domain families : Pfam (Sanger)Shadoo (PF14999)   
Domain families : Pfam (NCBI)pfam14999   
Conserved Domain (NCBI)SPRN
DMDM Disease mutations503542
Blocks (Seattle)SPRN
SuperfamilyQ5BIV9
Human Protein AtlasENSG00000203772
Peptide AtlasQ5BIV9
HPRD18499
IPIIPI00554799   
Protein Interaction databases
DIP (DOE-UCLA)Q5BIV9
IntAct (EBI)Q5BIV9
FunCoupENSG00000203772
BioGRIDSPRN
STRING (EMBL)SPRN
ZODIACSPRN
Ontologies - Pathways
QuickGOQ5BIV9
Ontology : AmiGOnucleic acid binding  nucleolus  cytosol  plasma membrane  protein import into nucleus  anchored component of membrane  vesicle  
Ontology : EGO-EBInucleic acid binding  nucleolus  cytosol  plasma membrane  protein import into nucleus  anchored component of membrane  vesicle  
NDEx NetworkSPRN
Atlas of Cancer Signalling NetworkSPRN
Wikipedia pathwaysSPRN
Orthology - Evolution
OrthoDB503542
GeneTree (enSembl)ENSG00000203772
Phylogenetic Trees/Animal Genes : TreeFamSPRN
HOVERGENQ5BIV9
HOGENOMQ5BIV9
Homologs : HomoloGeneSPRN
Homology/Alignments : Family Browser (UCSC)SPRN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPRN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPRN
dbVarSPRN
ClinVarSPRN
1000_GenomesSPRN 
Exome Variant ServerSPRN
ExAC (Exome Aggregation Consortium)SPRN (select the gene name)
Genetic variants : HAPMAP503542
Genomic Variants (DGV)SPRN [DGVbeta]
DECIPHER (Syndromes)10:135234170-135238121  ENSG00000203772
CONAN: Copy Number AnalysisSPRN 
Mutations
ICGC Data PortalSPRN 
TCGA Data PortalSPRN 
Broad Tumor PortalSPRN
OASIS PortalSPRN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPRN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPRN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPRN
DgiDB (Drug Gene Interaction Database)SPRN
DoCM (Curated mutations)SPRN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPRN (select a term)
intoGenSPRN
Cancer3DSPRN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610447   
Orphanet
MedgenSPRN
Genetic Testing Registry SPRN
NextProtQ5BIV9 [Medical]
TSGene503542
GENETestsSPRN
Huge Navigator SPRN [HugePedia]
snp3D : Map Gene to Disease503542
BioCentury BCIQSPRN
ClinGenSPRN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD503542
Chemical/Pharm GKB GenePA142670876
Clinical trialSPRN
Miscellaneous
canSAR (ICR)SPRN (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRN
EVEXSPRN
GoPubMedSPRN
iHOPSPRN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:34 CET 2017

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