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SPRNP1 (shadow of prion protein pseudogene 1)

Identity

Alias_symbol (synonym)FLJ44653
Other alias-
HGNC (Hugo) SPRNP1
LocusID (NCBI) 399833
Atlas_Id 74203
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 133566719 and ends at 133569958 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRNP1   37819
Cards
Entrez_Gene (NCBI)SPRNP1  399833  shadow of prion protein pseudogene 1
Aliases
GeneCards (Weizmann)SPRNP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:133566719-133569958 [Contig_View]  SPRNP1 [Vega]
TCGA cBioPortalSPRNP1
AceView (NCBI)SPRNP1
Genatlas (Paris)SPRNP1
WikiGenes399833
SOURCE (Princeton)SPRNP1
Genetics Home Reference (NIH)SPRNP1
Genomic and cartography
GoldenPath hg38 (UCSC)SPRNP1  -     chr10:133566719-133569958 -  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPRNP1  -     10q26.3   [Description]    (hg19-Feb_2009)
EnsemblSPRNP1 - 10q26.3 [CytoView hg19]  SPRNP1 - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBISPRNP1 [Mapview hg19]  SPRNP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126615 BC136964
RefSeq transcript (Entrez)NM_001001678
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPRNP1
Cluster EST : UnigeneHs.660426 [ NCBI ]
CGAP (NCI)Hs.660426
Gene ExpressionSPRNP1 [ NCBI-GEO ]   SPRNP1 [ EBI - ARRAY_EXPRESS ]   SPRNP1 [ SEEK ]   SPRNP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPRNP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)399833
GTEX Portal (Tissue expression)SPRNP1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPRNP1
DMDM Disease mutations399833
Blocks (Seattle)SPRNP1
HPRD13492
IPIIPI00418957   
Protein Interaction databases
BioGRIDSPRNP1
STRING (EMBL)SPRNP1
ZODIACSPRNP1
Ontologies - Pathways
Huge Navigator SPRNP1 [HugePedia]
snp3D : Map Gene to Disease399833
BioCentury BCIQSPRNP1
ClinGenSPRNP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399833
Clinical trialSPRNP1
Miscellaneous
canSAR (ICR)SPRNP1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRNP1
EVEXSPRNP1
GoPubMedSPRNP1
iHOPSPRNP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:22:38 CET 2017

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