Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPRR2C (small proline-rich protein 2C (pseudogene))

Identity

Alias_namessmall proline-rich protein 2C
small proline-rich protein 2C (pseudogene)
Other alias-
HGNC (Hugo) SPRR2C
LocusID (NCBI) 6702
Atlas_Id 74205
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153112594 and ends at 153113969 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRR2C   11263
Cards
Entrez_Gene (NCBI)SPRR2C  6702  small proline-rich protein 2C (pseudogene)
Aliases
GeneCards (Weizmann)SPRR2C
Ensembl hg19 (Hinxton) [Gene_View]  chr1:153112594-153113969 [Contig_View]  SPRR2C [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:153112594-153113969 [Contig_View]  SPRR2C [Vega]
TCGA cBioPortalSPRR2C
AceView (NCBI)SPRR2C
Genatlas (Paris)SPRR2C
WikiGenes6702
SOURCE (Princeton)SPRR2C
Genetics Home Reference (NIH)SPRR2C
Genomic and cartography
GoldenPath hg19 (UCSC)SPRR2C  -     chr1:153112594-153113969 -  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPRR2C  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblSPRR2C - 1q21.3 [CytoView hg19]  SPRR2C - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBISPRR2C [Mapview hg19]  SPRR2C [Mapview hg38]
OMIM182269   
Gene and transcription
Genbank (Entrez)BC120937 M21539
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_005086 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)SPRR2C
Cluster EST : UnigeneHs.2421 [ NCBI ]
CGAP (NCI)Hs.2421
Gene ExpressionSPRR2C [ NCBI-GEO ]   SPRR2C [ EBI - ARRAY_EXPRESS ]   SPRR2C [ SEEK ]   SPRR2C [ MEM ]
Gene Expression Viewer (FireBrowse)SPRR2C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6702
GTEX Portal (Tissue expression)SPRR2C
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPRR2C
DMDM Disease mutations6702
Blocks (Seattle)SPRR2C
HPRD01651
IPIIPI00386598   IPI00000849   IPI00008526   IPI00783191   
Protein Interaction databases
BioGRIDSPRR2C
STRING (EMBL)SPRR2C
ZODIACSPRR2C
Ontologies - Pathways
Huge Navigator SPRR2C [HugePedia]
snp3D : Map Gene to Disease6702
BioCentury BCIQSPRR2C
ClinGenSPRR2C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6702
Chemical/Pharm GKB GenePA36092
Clinical trialSPRR2C
Miscellaneous
canSAR (ICR)SPRR2C (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRR2C
EVEXSPRR2C
GoPubMedSPRR2C
iHOPSPRR2C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:35 CET 2017

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