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SPRR2D (small proline rich protein 2D)

Identity

Alias_namessmall proline-rich protein 2D
Other alias-
HGNC (Hugo) SPRR2D
LocusID (NCBI) 6703
Atlas_Id 74206
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153039725 and ends at 153041118 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRR2D   11264
Cards
Entrez_Gene (NCBI)SPRR2D  6703  small proline rich protein 2D
Aliases
GeneCards (Weizmann)SPRR2D
Ensembl hg19 (Hinxton)ENSG00000163216 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163216 [Gene_View]  chr1:153039725-153041118 [Contig_View]  SPRR2D [Vega]
ICGC DataPortalENSG00000163216
TCGA cBioPortalSPRR2D
AceView (NCBI)SPRR2D
Genatlas (Paris)SPRR2D
WikiGenes6703
SOURCE (Princeton)SPRR2D
Genetics Home Reference (NIH)SPRR2D
Genomic and cartography
GoldenPath hg38 (UCSC)SPRR2D  -     chr1:153039725-153041118 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPRR2D  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblSPRR2D - 1q21.3 [CytoView hg19]  SPRR2D - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBISPRR2D [Mapview hg19]  SPRR2D [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI383975 AI860616 AK291317 BC093801 BC093803
RefSeq transcript (Entrez)NM_006945
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPRR2D
Cluster EST : UnigeneHs.505327 [ NCBI ]
CGAP (NCI)Hs.505327
Alternative Splicing GalleryENSG00000163216
Gene ExpressionSPRR2D [ NCBI-GEO ]   SPRR2D [ EBI - ARRAY_EXPRESS ]   SPRR2D [ SEEK ]   SPRR2D [ MEM ]
Gene Expression Viewer (FireBrowse)SPRR2D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6703
GTEX Portal (Tissue expression)SPRR2D
Human Protein AtlasENSG00000163216-SPRR2D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP22532   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP22532  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP22532
Splice isoforms : SwissVarP22532
PhosPhoSitePlusP22532
Domains : Interpro (EBI)SPRR/LCE    SPRR2   
Domain families : Pfam (Sanger)SPRR2 (PF14820)   
Domain families : Pfam (NCBI)pfam14820   
Conserved Domain (NCBI)SPRR2D
DMDM Disease mutations6703
Blocks (Seattle)SPRR2D
SuperfamilyP22532
Human Protein Atlas [tissue]ENSG00000163216-SPRR2D [tissue]
Peptide AtlasP22532
HPRD01650
Protein Interaction databases
DIP (DOE-UCLA)P22532
IntAct (EBI)P22532
FunCoupENSG00000163216
BioGRIDSPRR2D
STRING (EMBL)SPRR2D
ZODIACSPRR2D
Ontologies - Pathways
QuickGOP22532
Ontology : AmiGOcornified envelope  cornified envelope  structural molecule activity  cytoplasm  cytosol  epidermis development  peptide cross-linking  keratinocyte differentiation  cornification  
Ontology : EGO-EBIcornified envelope  cornified envelope  structural molecule activity  cytoplasm  cytosol  epidermis development  peptide cross-linking  keratinocyte differentiation  cornification  
NDEx NetworkSPRR2D
Atlas of Cancer Signalling NetworkSPRR2D
Wikipedia pathwaysSPRR2D
Orthology - Evolution
OrthoDB6703
GeneTree (enSembl)ENSG00000163216
Phylogenetic Trees/Animal Genes : TreeFamSPRR2D
HOVERGENP22532
HOGENOMP22532
Homologs : HomoloGeneSPRR2D
Homology/Alignments : Family Browser (UCSC)SPRR2D
Gene fusions - Rearrangements
Fusion: Tumor Portal SPRR2D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPRR2D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPRR2D
dbVarSPRR2D
ClinVarSPRR2D
1000_GenomesSPRR2D 
Exome Variant ServerSPRR2D
ExAC (Exome Aggregation Consortium)ENSG00000163216
GNOMAD BrowserENSG00000163216
Genetic variants : HAPMAP6703
Genomic Variants (DGV)SPRR2D [DGVbeta]
DECIPHERSPRR2D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPRR2D 
Mutations
ICGC Data PortalSPRR2D 
TCGA Data PortalSPRR2D 
Broad Tumor PortalSPRR2D
OASIS PortalSPRR2D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPRR2D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPRR2D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPRR2D
DgiDB (Drug Gene Interaction Database)SPRR2D
DoCM (Curated mutations)SPRR2D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPRR2D (select a term)
intoGenSPRR2D
Cancer3DSPRR2D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPRR2D
Genetic Testing Registry SPRR2D
NextProtP22532 [Medical]
TSGene6703
GENETestsSPRR2D
Target ValidationSPRR2D
Huge Navigator SPRR2D [HugePedia]
snp3D : Map Gene to Disease6703
BioCentury BCIQSPRR2D
ClinGenSPRR2D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6703
Chemical/Pharm GKB GenePA36093
Clinical trialSPRR2D
Miscellaneous
canSAR (ICR)SPRR2D (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRR2D
EVEXSPRR2D
GoPubMedSPRR2D
iHOPSPRR2D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:30:54 CET 2017

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