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SPRR2F (small proline rich protein 2F)

Identity

Alias_namessmall proline-rich protein 2F
Other alias-
HGNC (Hugo) SPRR2F
LocusID (NCBI) 6705
Atlas_Id 74208
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153112124 and ends at 153113515 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRR2F   11266
Cards
Entrez_Gene (NCBI)SPRR2F  6705  small proline rich protein 2F
Aliases
GeneCards (Weizmann)SPRR2F
Ensembl hg19 (Hinxton)ENSG00000244094 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244094 [Gene_View]  chr1:153112124-153113515 [Contig_View]  SPRR2F [Vega]
ICGC DataPortalENSG00000244094
TCGA cBioPortalSPRR2F
AceView (NCBI)SPRR2F
Genatlas (Paris)SPRR2F
WikiGenes6705
SOURCE (Princeton)SPRR2F
Genetics Home Reference (NIH)SPRR2F
Genomic and cartography
GoldenPath hg38 (UCSC)SPRR2F  -     chr1:153112124-153113515 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPRR2F  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblSPRR2F - 1q21.3 [CytoView hg19]  SPRR2F - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBISPRR2F [Mapview hg19]  SPRR2F [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI051688 BC156788
RefSeq transcript (Entrez)NM_001014450
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPRR2F
Cluster EST : UnigeneHs.490252 [ NCBI ]
CGAP (NCI)Hs.490252
Alternative Splicing GalleryENSG00000244094
Gene ExpressionSPRR2F [ NCBI-GEO ]   SPRR2F [ EBI - ARRAY_EXPRESS ]   SPRR2F [ SEEK ]   SPRR2F [ MEM ]
Gene Expression Viewer (FireBrowse)SPRR2F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6705
GTEX Portal (Tissue expression)SPRR2F
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RM1
Splice isoforms : SwissVarQ96RM1
PhosPhoSitePlusQ96RM1
Domains : Interpro (EBI)SPRR/LCE    SPRR2   
Domain families : Pfam (Sanger)SPRR2 (PF14820)   
Domain families : Pfam (NCBI)pfam14820   
Conserved Domain (NCBI)SPRR2F
DMDM Disease mutations6705
Blocks (Seattle)SPRR2F
SuperfamilyQ96RM1
Human Protein AtlasENSG00000244094
Peptide AtlasQ96RM1
HPRD18699
IPIIPI00045418   
Protein Interaction databases
DIP (DOE-UCLA)Q96RM1
IntAct (EBI)Q96RM1
FunCoupENSG00000244094
BioGRIDSPRR2F
STRING (EMBL)SPRR2F
ZODIACSPRR2F
Ontologies - Pathways
QuickGOQ96RM1
Ontology : AmiGOcornified envelope  cornified envelope  cornified envelope  structural molecule activity  cytoplasm  cytosol  epidermis development  peptide cross-linking  keratinocyte differentiation  keratinocyte differentiation  cornification  
Ontology : EGO-EBIcornified envelope  cornified envelope  cornified envelope  structural molecule activity  cytoplasm  cytosol  epidermis development  peptide cross-linking  keratinocyte differentiation  keratinocyte differentiation  cornification  
NDEx NetworkSPRR2F
Atlas of Cancer Signalling NetworkSPRR2F
Wikipedia pathwaysSPRR2F
Orthology - Evolution
OrthoDB6705
GeneTree (enSembl)ENSG00000244094
Phylogenetic Trees/Animal Genes : TreeFamSPRR2F
HOVERGENQ96RM1
HOGENOMQ96RM1
Homologs : HomoloGeneSPRR2F
Homology/Alignments : Family Browser (UCSC)SPRR2F
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPRR2F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPRR2F
dbVarSPRR2F
ClinVarSPRR2F
1000_GenomesSPRR2F 
Exome Variant ServerSPRR2F
ExAC (Exome Aggregation Consortium)SPRR2F (select the gene name)
Genetic variants : HAPMAP6705
Genomic Variants (DGV)SPRR2F [DGVbeta]
DECIPHERSPRR2F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPRR2F 
Mutations
ICGC Data PortalSPRR2F 
TCGA Data PortalSPRR2F 
Broad Tumor PortalSPRR2F
OASIS PortalSPRR2F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPRR2F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPRR2F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPRR2F
DgiDB (Drug Gene Interaction Database)SPRR2F
DoCM (Curated mutations)SPRR2F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPRR2F (select a term)
intoGenSPRR2F
Cancer3DSPRR2F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPRR2F
Genetic Testing Registry SPRR2F
NextProtQ96RM1 [Medical]
TSGene6705
GENETestsSPRR2F
Target ValidationSPRR2F
Huge Navigator SPRR2F [HugePedia]
snp3D : Map Gene to Disease6705
BioCentury BCIQSPRR2F
ClinGenSPRR2F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6705
Chemical/Pharm GKB GenePA36095
Clinical trialSPRR2F
Miscellaneous
canSAR (ICR)SPRR2F (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRR2F
EVEXSPRR2F
GoPubMedSPRR2F
iHOPSPRR2F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:03 CEST 2017

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