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SPRR2G (small proline rich protein 2G)

Identity

Alias_namessmall proline-rich protein 2G
Other alias-
HGNC (Hugo) SPRR2G
LocusID (NCBI) 6706
Atlas_Id 53597
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153122058 and ends at 153123427 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NCSTN (1q23.2) / SPRR2G (1q21.3)NCSTN 1q23.2 / SPRR2G 1q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRR2G   11267
Cards
Entrez_Gene (NCBI)SPRR2G  6706  small proline rich protein 2G
Aliases
GeneCards (Weizmann)SPRR2G
Ensembl hg19 (Hinxton)ENSG00000159516 [Gene_View]  chr1:153122058-153123427 [Contig_View]  SPRR2G [Vega]
Ensembl hg38 (Hinxton)ENSG00000159516 [Gene_View]  chr1:153122058-153123427 [Contig_View]  SPRR2G [Vega]
ICGC DataPortalENSG00000159516
TCGA cBioPortalSPRR2G
AceView (NCBI)SPRR2G
Genatlas (Paris)SPRR2G
WikiGenes6706
SOURCE (Princeton)SPRR2G
Genetics Home Reference (NIH)SPRR2G
Genomic and cartography
GoldenPath hg19 (UCSC)SPRR2G  -     chr1:153122058-153123427 -  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPRR2G  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblSPRR2G - 1q21.3 [CytoView hg19]  SPRR2G - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBISPRR2G [Mapview hg19]  SPRR2G [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA456642 AA490630 BC130455 BC133041 BC141500
RefSeq transcript (Entrez)NM_001014291
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)SPRR2G
Cluster EST : UnigeneHs.490253 [ NCBI ]
CGAP (NCI)Hs.490253
Alternative Splicing GalleryENSG00000159516
Gene ExpressionSPRR2G [ NCBI-GEO ]   SPRR2G [ EBI - ARRAY_EXPRESS ]   SPRR2G [ SEEK ]   SPRR2G [ MEM ]
Gene Expression Viewer (FireBrowse)SPRR2G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6706
GTEX Portal (Tissue expression)SPRR2G
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYE4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYE4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYE4
Splice isoforms : SwissVarQ9BYE4
PhosPhoSitePlusQ9BYE4
Domains : Interpro (EBI)SPRR2   
Domain families : Pfam (Sanger)SPRR2 (PF14820)   
Domain families : Pfam (NCBI)pfam14820   
Conserved Domain (NCBI)SPRR2G
DMDM Disease mutations6706
Blocks (Seattle)SPRR2G
SuperfamilyQ9BYE4
Human Protein AtlasENSG00000159516
Peptide AtlasQ9BYE4
HPRD18500
Protein Interaction databases
DIP (DOE-UCLA)Q9BYE4
IntAct (EBI)Q9BYE4
FunCoupENSG00000159516
BioGRIDSPRR2G
STRING (EMBL)SPRR2G
ZODIACSPRR2G
Ontologies - Pathways
QuickGOQ9BYE4
Ontology : AmiGOcornified envelope  cornified envelope  structural molecule activity  cytoplasm  epidermis development  peptide cross-linking  keratinocyte differentiation  keratinocyte differentiation  keratinization  
Ontology : EGO-EBIcornified envelope  cornified envelope  structural molecule activity  cytoplasm  epidermis development  peptide cross-linking  keratinocyte differentiation  keratinocyte differentiation  keratinization  
NDEx NetworkSPRR2G
Atlas of Cancer Signalling NetworkSPRR2G
Wikipedia pathwaysSPRR2G
Orthology - Evolution
OrthoDB6706
GeneTree (enSembl)ENSG00000159516
Phylogenetic Trees/Animal Genes : TreeFamSPRR2G
HOVERGENQ9BYE4
HOGENOMQ9BYE4
Homologs : HomoloGeneSPRR2G
Homology/Alignments : Family Browser (UCSC)SPRR2G
Gene fusions - Rearrangements
Fusion : MitelmanNCSTN/SPRR2G [1q23.2/1q21.3]  [t(1;1)(q21;q23)]  
Fusion: TCGANCSTN 1q23.2 SPRR2G 1q21.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPRR2G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPRR2G
dbVarSPRR2G
ClinVarSPRR2G
1000_GenomesSPRR2G 
Exome Variant ServerSPRR2G
ExAC (Exome Aggregation Consortium)SPRR2G (select the gene name)
Genetic variants : HAPMAP6706
Genomic Variants (DGV)SPRR2G [DGVbeta]
DECIPHER (Syndromes)1:153122058-153123427  ENSG00000159516
CONAN: Copy Number AnalysisSPRR2G 
Mutations
ICGC Data PortalSPRR2G 
TCGA Data PortalSPRR2G 
Broad Tumor PortalSPRR2G
OASIS PortalSPRR2G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPRR2G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPRR2G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPRR2G
DgiDB (Drug Gene Interaction Database)SPRR2G
DoCM (Curated mutations)SPRR2G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPRR2G (select a term)
intoGenSPRR2G
Cancer3DSPRR2G(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPRR2G
Genetic Testing Registry SPRR2G
NextProtQ9BYE4 [Medical]
TSGene6706
GENETestsSPRR2G
Huge Navigator SPRR2G [HugePedia]
snp3D : Map Gene to Disease6706
BioCentury BCIQSPRR2G
ClinGenSPRR2G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6706
Chemical/Pharm GKB GenePA36096
Clinical trialSPRR2G
Miscellaneous
canSAR (ICR)SPRR2G (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRR2G
EVEXSPRR2G
GoPubMedSPRR2G
iHOPSPRR2G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:29:00 CET 2017

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