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SPRR2G (small proline rich protein 2G)

Identity

Alias (NCBI)-
HGNC (Hugo) SPRR2G
HGNC Previous namesmall proline-rich protein 2G
LocusID (NCBI) 6706
Atlas_Id 53597
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153149582 and ends at 153150890 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NCSTN (1q23.2) / SPRR2G (1q21.3)NCSTN 1q23.2 / SPRR2G 1q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPRR2G   11267
Cards
Entrez_Gene (NCBI)SPRR2G    small proline rich protein 2G
Aliases
GeneCards (Weizmann)SPRR2G
Ensembl hg19 (Hinxton)ENSG00000159516 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159516 [Gene_View]  ENSG00000159516 [Sequence]  chr1:153149582-153150890 [Contig_View]  SPRR2G [Vega]
ICGC DataPortalENSG00000159516
TCGA cBioPortalSPRR2G
AceView (NCBI)SPRR2G
Genatlas (Paris)SPRR2G
SOURCE (Princeton)SPRR2G
Genetics Home Reference (NIH)SPRR2G
Genomic and cartography
GoldenPath hg38 (UCSC)SPRR2G  -     chr1:153149582-153150890 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPRR2G  -     1q21.3   [Description]    (hg19-Feb_2009)
GoldenPathSPRR2G - 1q21.3 [CytoView hg19]  SPRR2G - 1q21.3 [CytoView hg38]
ImmunoBaseENSG00000159516
Genome Data Viewer NCBISPRR2G [Mapview hg19]  
OMIM617590   
Gene and transcription
Genbank (Entrez)AA456642 AA490630 BC130455 BC133041
RefSeq transcript (Entrez)NM_001014291
Consensus coding sequences : CCDS (NCBI)SPRR2G
Gene ExpressionSPRR2G [ NCBI-GEO ]   SPRR2G [ EBI - ARRAY_EXPRESS ]   SPRR2G [ SEEK ]   SPRR2G [ MEM ]
Gene Expression Viewer (FireBrowse)SPRR2G [ Firebrowse - Broad ]
GenevisibleExpression of SPRR2G in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6706
GTEX Portal (Tissue expression)SPRR2G
Human Protein AtlasENSG00000159516-SPRR2G [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYE4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYE4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYE4
PhosPhoSitePlusQ9BYE4
Domains : Interpro (EBI)SPRR2   
Domain families : Pfam (Sanger)SPRR2 (PF14820)   
Domain families : Pfam (NCBI)pfam14820   
Conserved Domain (NCBI)SPRR2G
SuperfamilyQ9BYE4
AlphaFold pdb e-kbQ9BYE4   
Human Protein Atlas [tissue]ENSG00000159516-SPRR2G [tissue]
HPRD18500
Protein Interaction databases
DIP (DOE-UCLA)Q9BYE4
IntAct (EBI)Q9BYE4
BioGRIDSPRR2G
STRING (EMBL)SPRR2G
ZODIACSPRR2G
Ontologies - Pathways
QuickGOQ9BYE4
Ontology : AmiGOcornified envelope  cornified envelope  cytosol  epidermis development  keratinocyte differentiation  cornification  
Ontology : EGO-EBIcornified envelope  cornified envelope  cytosol  epidermis development  keratinocyte differentiation  cornification  
NDEx NetworkSPRR2G
Atlas of Cancer Signalling NetworkSPRR2G
Wikipedia pathwaysSPRR2G
Orthology - Evolution
OrthoDB6706
GeneTree (enSembl)ENSG00000159516
Phylogenetic Trees/Animal Genes : TreeFamSPRR2G
Homologs : HomoloGeneSPRR2G
Homology/Alignments : Family Browser (UCSC)SPRR2G
Gene fusions - Rearrangements
Fusion : MitelmanNCSTN/SPRR2G [1q23.2/1q21.3]  
Fusion : QuiverSPRR2G
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPRR2G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPRR2G
dbVarSPRR2G
ClinVarSPRR2G
MonarchSPRR2G
1000_GenomesSPRR2G 
Exome Variant ServerSPRR2G
GNOMAD BrowserENSG00000159516
Varsome BrowserSPRR2G
ACMGSPRR2G variants
VarityQ9BYE4
Genomic Variants (DGV)SPRR2G [DGVbeta]
DECIPHERSPRR2G [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPRR2G 
Mutations
ICGC Data PortalSPRR2G 
TCGA Data PortalSPRR2G 
Broad Tumor PortalSPRR2G
OASIS PortalSPRR2G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPRR2G  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPRR2G
Mutations and Diseases : HGMDSPRR2G
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPRR2G
DgiDB (Drug Gene Interaction Database)SPRR2G
DoCM (Curated mutations)SPRR2G
CIViC (Clinical Interpretations of Variants in Cancer)SPRR2G
Cancer3DSPRR2G
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617590   
Orphanet
DisGeNETSPRR2G
MedgenSPRR2G
Genetic Testing Registry SPRR2G
NextProtQ9BYE4 [Medical]
GENETestsSPRR2G
Target ValidationSPRR2G
Huge Navigator SPRR2G [HugePedia]
ClinGenSPRR2G
Clinical trials, drugs, therapy
MyCancerGenomeSPRR2G
Protein Interactions : CTDSPRR2G
Pharm GKB GenePA36096
PharosQ9BYE4
Clinical trialSPRR2G
Miscellaneous
canSAR (ICR)SPRR2G
HarmonizomeSPRR2G
DataMed IndexSPRR2G
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPRR2G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:33:00 CEST 2021

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