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SPRR3 (small proline rich protein 3)

Identity

Alias_namessmall proline-rich protein 3
Other alias-
HGNC (Hugo) SPRR3
LocusID (NCBI) 6707
Atlas_Id 50003
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152974223 and ends at 152976332 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SPRR3 (1q21.3) / RPS15A (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRR3   11268
Cards
Entrez_Gene (NCBI)SPRR3  6707  small proline rich protein 3
Aliases
GeneCards (Weizmann)SPRR3
Ensembl hg19 (Hinxton)ENSG00000163209 [Gene_View]  chr1:152974223-152976332 [Contig_View]  SPRR3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163209 [Gene_View]  chr1:152974223-152976332 [Contig_View]  SPRR3 [Vega]
ICGC DataPortalENSG00000163209
TCGA cBioPortalSPRR3
AceView (NCBI)SPRR3
Genatlas (Paris)SPRR3
WikiGenes6707
SOURCE (Princeton)SPRR3
Genetics Home Reference (NIH)SPRR3
Genomic and cartography
GoldenPath hg19 (UCSC)SPRR3  -     chr1:152974223-152976332 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPRR3  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblSPRR3 - 1q21.3 [CytoView hg19]  SPRR3 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBISPRR3 [Mapview hg19]  SPRR3 [Mapview hg38]
OMIM182271   
Gene and transcription
Genbank (Entrez)AJ243667 AK309626 AK311823 AY118269 BC017802
RefSeq transcript (Entrez)NM_001097589 NM_005416
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)SPRR3
Cluster EST : UnigeneHs.139322 [ NCBI ]
CGAP (NCI)Hs.139322
Alternative Splicing GalleryENSG00000163209
Gene ExpressionSPRR3 [ NCBI-GEO ]   SPRR3 [ EBI - ARRAY_EXPRESS ]   SPRR3 [ SEEK ]   SPRR3 [ MEM ]
Gene Expression Viewer (FireBrowse)SPRR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6707
GTEX Portal (Tissue expression)SPRR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBC9
Splice isoforms : SwissVarQ9UBC9
PhosPhoSitePlusQ9UBC9
Domains : Interpro (EBI)SPRR/LCE   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPRR3
DMDM Disease mutations6707
Blocks (Seattle)SPRR3
SuperfamilyQ9UBC9
Human Protein AtlasENSG00000163209
Peptide AtlasQ9UBC9
HPRD01652
IPIIPI00082931   IPI01010668   IPI00642247   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBC9
IntAct (EBI)Q9UBC9
FunCoupENSG00000163209
BioGRIDSPRR3
STRING (EMBL)SPRR3
ZODIACSPRR3
Ontologies - Pathways
QuickGOQ9UBC9
Ontology : AmiGOcornified envelope  structural molecule activity  protein binding  cytoplasm  epidermis development  peptide cross-linking  keratinocyte differentiation  keratinocyte differentiation  keratinization  wound healing  extracellular exosome  
Ontology : EGO-EBIcornified envelope  structural molecule activity  protein binding  cytoplasm  epidermis development  peptide cross-linking  keratinocyte differentiation  keratinocyte differentiation  keratinization  wound healing  extracellular exosome  
NDEx NetworkSPRR3
Atlas of Cancer Signalling NetworkSPRR3
Wikipedia pathwaysSPRR3
Orthology - Evolution
OrthoDB6707
GeneTree (enSembl)ENSG00000163209
Phylogenetic Trees/Animal Genes : TreeFamSPRR3
HOVERGENQ9UBC9
HOGENOMQ9UBC9
Homologs : HomoloGeneSPRR3
Homology/Alignments : Family Browser (UCSC)SPRR3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPRR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPRR3
dbVarSPRR3
ClinVarSPRR3
1000_GenomesSPRR3 
Exome Variant ServerSPRR3
ExAC (Exome Aggregation Consortium)SPRR3 (select the gene name)
Genetic variants : HAPMAP6707
Genomic Variants (DGV)SPRR3 [DGVbeta]
DECIPHER (Syndromes)1:152974223-152976332  ENSG00000163209
CONAN: Copy Number AnalysisSPRR3 
Mutations
ICGC Data PortalSPRR3 
TCGA Data PortalSPRR3 
Broad Tumor PortalSPRR3
OASIS PortalSPRR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPRR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPRR3
intOGen PortalSPRR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPRR3
DgiDB (Drug Gene Interaction Database)SPRR3
DoCM (Curated mutations)SPRR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPRR3 (select a term)
intoGenSPRR3
Cancer3DSPRR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182271   
Orphanet
MedgenSPRR3
Genetic Testing Registry SPRR3
NextProtQ9UBC9 [Medical]
TSGene6707
GENETestsSPRR3
Huge Navigator SPRR3 [HugePedia]
snp3D : Map Gene to Disease6707
BioCentury BCIQSPRR3
ClinGenSPRR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6707
Chemical/Pharm GKB GenePA36097
Clinical trialSPRR3
Miscellaneous
canSAR (ICR)SPRR3 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRR3
EVEXSPRR3
GoPubMedSPRR3
iHOPSPRR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:29:01 CET 2017

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