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SPRR4 (small proline rich protein 4)

Identity

Alias_namessmall proline-rich protein 4
Other alias-
HGNC (Hugo) SPRR4
LocusID (NCBI) 163778
Atlas_Id 74209
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152970653 and ends at 152972573 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRR4   23173
Cards
Entrez_Gene (NCBI)SPRR4  163778  small proline rich protein 4
Aliases
GeneCards (Weizmann)SPRR4
Ensembl hg19 (Hinxton)ENSG00000184148 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184148 [Gene_View]  chr1:152970653-152972573 [Contig_View]  SPRR4 [Vega]
ICGC DataPortalENSG00000184148
TCGA cBioPortalSPRR4
AceView (NCBI)SPRR4
Genatlas (Paris)SPRR4
WikiGenes163778
SOURCE (Princeton)SPRR4
Genetics Home Reference (NIH)SPRR4
Genomic and cartography
GoldenPath hg38 (UCSC)SPRR4  -     chr1:152970653-152972573 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPRR4  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblSPRR4 - 1q21.3 [CytoView hg19]  SPRR4 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBISPRR4 [Mapview hg19]  SPRR4 [Mapview hg38]
OMIM616363   
Gene and transcription
Genbank (Entrez)AI125483 BC069445 BC069549 BC112170 BC112172
RefSeq transcript (Entrez)NM_173080
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPRR4
Cluster EST : UnigeneHs.433629 [ NCBI ]
CGAP (NCI)Hs.433629
Alternative Splicing GalleryENSG00000184148
Gene ExpressionSPRR4 [ NCBI-GEO ]   SPRR4 [ EBI - ARRAY_EXPRESS ]   SPRR4 [ SEEK ]   SPRR4 [ MEM ]
Gene Expression Viewer (FireBrowse)SPRR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163778
GTEX Portal (Tissue expression)SPRR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PI1
Splice isoforms : SwissVarQ96PI1
PhosPhoSitePlusQ96PI1
Domains : Interpro (EBI)SPRR/LCE   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPRR4
DMDM Disease mutations163778
Blocks (Seattle)SPRR4
SuperfamilyQ96PI1
Human Protein AtlasENSG00000184148
Peptide AtlasQ96PI1
HPRD18101
IPIIPI00173647   
Protein Interaction databases
DIP (DOE-UCLA)Q96PI1
IntAct (EBI)Q96PI1
FunCoupENSG00000184148
BioGRIDSPRR4
STRING (EMBL)SPRR4
ZODIACSPRR4
Ontologies - Pathways
QuickGOQ96PI1
Ontology : AmiGOcornified envelope  structural molecule activity  cytoplasm  cell cortex  peptide cross-linking  keratinocyte differentiation  keratinization  
Ontology : EGO-EBIcornified envelope  structural molecule activity  cytoplasm  cell cortex  peptide cross-linking  keratinocyte differentiation  keratinization  
NDEx NetworkSPRR4
Atlas of Cancer Signalling NetworkSPRR4
Wikipedia pathwaysSPRR4
Orthology - Evolution
OrthoDB163778
GeneTree (enSembl)ENSG00000184148
Phylogenetic Trees/Animal Genes : TreeFamSPRR4
HOVERGENQ96PI1
HOGENOMQ96PI1
Homologs : HomoloGeneSPRR4
Homology/Alignments : Family Browser (UCSC)SPRR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPRR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPRR4
dbVarSPRR4
ClinVarSPRR4
1000_GenomesSPRR4 
Exome Variant ServerSPRR4
ExAC (Exome Aggregation Consortium)SPRR4 (select the gene name)
Genetic variants : HAPMAP163778
Genomic Variants (DGV)SPRR4 [DGVbeta]
DECIPHERSPRR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPRR4 
Mutations
ICGC Data PortalSPRR4 
TCGA Data PortalSPRR4 
Broad Tumor PortalSPRR4
OASIS PortalSPRR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPRR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPRR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPRR4
DgiDB (Drug Gene Interaction Database)SPRR4
DoCM (Curated mutations)SPRR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPRR4 (select a term)
intoGenSPRR4
Cancer3DSPRR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616363   
Orphanet
MedgenSPRR4
Genetic Testing Registry SPRR4
NextProtQ96PI1 [Medical]
TSGene163778
GENETestsSPRR4
Target ValidationSPRR4
Huge Navigator SPRR4 [HugePedia]
snp3D : Map Gene to Disease163778
BioCentury BCIQSPRR4
ClinGenSPRR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163778
Chemical/Pharm GKB GenePA134866393
Clinical trialSPRR4
Miscellaneous
canSAR (ICR)SPRR4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRR4
EVEXSPRR4
GoPubMedSPRR4
iHOPSPRR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:25 CEST 2017

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