Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPRTN (SprT-like N-terminal domain)

Identity

Alias_namesC1orf124
chromosome 1 open reading frame 124
Alias_symbol (synonym)DKFZP547N043
Spartan
DVC1
Other aliasPRO4323
spartan
HGNC (Hugo) SPRTN
LocusID (NCBI) 83932
Atlas_Id 40315
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 231337936 and ends at 231355027 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRTN   25356
Cards
Entrez_Gene (NCBI)SPRTN  83932  SprT-like N-terminal domain
AliasesC1orf124; DVC1; PRO4323; spartan
GeneCards (Weizmann)SPRTN
Ensembl hg19 (Hinxton)ENSG00000010072 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000010072 [Gene_View]  chr1:231337936-231355027 [Contig_View]  SPRTN [Vega]
ICGC DataPortalENSG00000010072
TCGA cBioPortalSPRTN
AceView (NCBI)SPRTN
Genatlas (Paris)SPRTN
WikiGenes83932
SOURCE (Princeton)SPRTN
Genetics Home Reference (NIH)SPRTN
Genomic and cartography
GoldenPath hg38 (UCSC)SPRTN  -     chr1:231337936-231355027 +  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPRTN  -     1q42.2   [Description]    (hg19-Feb_2009)
EnsemblSPRTN - 1q42.2 [CytoView hg19]  SPRTN - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBISPRTN [Mapview hg19]  SPRTN [Mapview hg38]
OMIM616086   616200   
Gene and transcription
Genbank (Entrez)AK027317 AK027613 AL512744 AM393399 AM393461
RefSeq transcript (Entrez)NM_001010984 NM_001261462 NM_032018
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPRTN
Cluster EST : UnigeneHs.554892 [ NCBI ]
CGAP (NCI)Hs.554892
Alternative Splicing GalleryENSG00000010072
Gene ExpressionSPRTN [ NCBI-GEO ]   SPRTN [ EBI - ARRAY_EXPRESS ]   SPRTN [ SEEK ]   SPRTN [ MEM ]
Gene Expression Viewer (FireBrowse)SPRTN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83932
GTEX Portal (Tissue expression)SPRTN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H040   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H040  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H040
Splice isoforms : SwissVarQ9H040
PhosPhoSitePlusQ9H040
Domaine pattern : Prosite (Expaxy)ZINC_PROTEASE (PS00142)   
Domains : Interpro (EBI)SprT-like_domain    Znf_Rad18_put   
Domain families : Pfam (Sanger)SprT-like (PF10263)   
Domain families : Pfam (NCBI)pfam10263   
Domain families : Smart (EMBL)SprT (SM00731)  ZnF_Rad18 (SM00734)  
Conserved Domain (NCBI)SPRTN
DMDM Disease mutations83932
Blocks (Seattle)SPRTN
PDB (SRS)5IY4   
PDB (PDBSum)5IY4   
PDB (IMB)5IY4   
PDB (RSDB)5IY4   
Structural Biology KnowledgeBase5IY4   
SCOP (Structural Classification of Proteins)5IY4   
CATH (Classification of proteins structures)5IY4   
SuperfamilyQ9H040
Human Protein AtlasENSG00000010072
Peptide AtlasQ9H040
HPRD13164
IPIIPI00552744   IPI00552963   IPI00514029   IPI00644126   
Protein Interaction databases
DIP (DOE-UCLA)Q9H040
IntAct (EBI)Q9H040
FunCoupENSG00000010072
BioGRIDSPRTN
STRING (EMBL)SPRTN
ZODIACSPRTN
Ontologies - Pathways
QuickGOQ9H040
Ontology : AmiGODNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  chromosome  cellular response to DNA damage stimulus  response to UV  nuclear speck  translesion synthesis  translesion synthesis  positive regulation of protein ubiquitination  ubiquitin binding  metal ion binding  K63-linked polyubiquitin binding  error-free translesion synthesis  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  chromosome  cellular response to DNA damage stimulus  response to UV  nuclear speck  translesion synthesis  translesion synthesis  positive regulation of protein ubiquitination  ubiquitin binding  metal ion binding  K63-linked polyubiquitin binding  error-free translesion synthesis  
NDEx NetworkSPRTN
Atlas of Cancer Signalling NetworkSPRTN
Wikipedia pathwaysSPRTN
Orthology - Evolution
OrthoDB83932
GeneTree (enSembl)ENSG00000010072
Phylogenetic Trees/Animal Genes : TreeFamSPRTN
HOVERGENQ9H040
HOGENOMQ9H040
Homologs : HomoloGeneSPRTN
Homology/Alignments : Family Browser (UCSC)SPRTN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPRTN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPRTN
dbVarSPRTN
ClinVarSPRTN
1000_GenomesSPRTN 
Exome Variant ServerSPRTN
ExAC (Exome Aggregation Consortium)SPRTN (select the gene name)
Genetic variants : HAPMAP83932
Genomic Variants (DGV)SPRTN [DGVbeta]
DECIPHERSPRTN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPRTN 
Mutations
ICGC Data PortalSPRTN 
TCGA Data PortalSPRTN 
Broad Tumor PortalSPRTN
OASIS PortalSPRTN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPRTN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPRTN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPRTN
DgiDB (Drug Gene Interaction Database)SPRTN
DoCM (Curated mutations)SPRTN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPRTN (select a term)
intoGenSPRTN
Cancer3DSPRTN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616086    616200   
Orphanet23322   
MedgenSPRTN
Genetic Testing Registry SPRTN
NextProtQ9H040 [Medical]
TSGene83932
GENETestsSPRTN
Target ValidationSPRTN
Huge Navigator SPRTN [HugePedia]
snp3D : Map Gene to Disease83932
BioCentury BCIQSPRTN
ClinGenSPRTN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83932
Chemical/Pharm GKB GenePA142672442
Clinical trialSPRTN
Miscellaneous
canSAR (ICR)SPRTN (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRTN
EVEXSPRTN
GoPubMedSPRTN
iHOPSPRTN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 14:08:24 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.