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SPRY4-AS1 (SPRY4 antisense RNA 1)

Identity

Alias_symbol (synonym)THCAT68
Other alias
HGNC (Hugo) SPRY4-AS1
LocusID (NCBI) 101926941
Atlas_Id 79770
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 142325293 and ends at 142464054 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SPRY4-AS1   53465
Cards
Entrez_Gene (NCBI)SPRY4-AS1  101926941  SPRY4 antisense RNA 1
AliasesTHCAT68
GeneCards (Weizmann)SPRY4-AS1
Ensembl hg19 (Hinxton)ENSG00000231185 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231185 [Gene_View]  ENSG00000231185 [Sequence]  chr5:142325293-142464054 [Contig_View]  SPRY4-AS1 [Vega]
ICGC DataPortalENSG00000231185
TCGA cBioPortalSPRY4-AS1
AceView (NCBI)SPRY4-AS1
Genatlas (Paris)SPRY4-AS1
WikiGenes101926941
SOURCE (Princeton)SPRY4-AS1
Genetics Home Reference (NIH)SPRY4-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SPRY4-AS1  -     chr5:142325293-142464054 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPRY4-AS1  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblSPRY4-AS1 - 5q31.3 [CytoView hg19]  SPRY4-AS1 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBISPRY4-AS1 [Mapview hg19]  SPRY4-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA358964 AI700977 DA537977
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPRY4-AS1
Cluster EST : UnigeneHs.658945 [ NCBI ]
CGAP (NCI)Hs.658945
Alternative Splicing GalleryENSG00000231185
Gene ExpressionSPRY4-AS1 [ NCBI-GEO ]   SPRY4-AS1 [ EBI - ARRAY_EXPRESS ]   SPRY4-AS1 [ SEEK ]   SPRY4-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPRY4-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101926941
GTEX Portal (Tissue expression)SPRY4-AS1
Human Protein AtlasENSG00000231185-SPRY4-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPRY4-AS1
DMDM Disease mutations101926941
Blocks (Seattle)SPRY4-AS1
Human Protein Atlas [tissue]ENSG00000231185-SPRY4-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000231185
BioGRIDSPRY4-AS1
STRING (EMBL)SPRY4-AS1
ZODIACSPRY4-AS1
Ontologies - Pathways
Huge Navigator SPRY4-AS1 [HugePedia]
snp3D : Map Gene to Disease101926941
BioCentury BCIQSPRY4-AS1
ClinGenSPRY4-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101926941
Clinical trialSPRY4-AS1
Miscellaneous
canSAR (ICR)SPRY4-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRY4-AS1
EVEXSPRY4-AS1
GoPubMedSPRY4-AS1
iHOPSPRY4-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:33:08 CEST 2018

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