Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPRY4-IT1 (SPRY4 intronic transcript 1)

Identity

Alias_namesSPRY4 intronic transcript 1 (non-protein coding)
Alias_symbol (synonym)SPRIGHTLY
Other alias
HGNC (Hugo) SPRY4-IT1
LocusID (NCBI) 100642175
Atlas_Id 52405
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 142317634 and ends at 142318322 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRY4-IT1   42394
Cards
Entrez_Gene (NCBI)SPRY4-IT1  100642175  SPRY4 intronic transcript 1
AliasesSPRIGHTLY
GeneCards (Weizmann)SPRY4-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:142317634-142318322 [Contig_View]  SPRY4-IT1 [Vega]
TCGA cBioPortalSPRY4-IT1
AceView (NCBI)SPRY4-IT1
Genatlas (Paris)SPRY4-IT1
WikiGenes100642175
SOURCE (Princeton)SPRY4-IT1
Genetics Home Reference (NIH)SPRY4-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)SPRY4-IT1  -     chr5:142317634-142318322 -  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPRY4-IT1  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblSPRY4-IT1 - 5q31.3 [CytoView hg19]  SPRY4-IT1 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBISPRY4-IT1 [Mapview hg19]  SPRY4-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024556
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPRY4-IT1
Cluster EST : UnigeneHs.684549 [ NCBI ]
CGAP (NCI)Hs.684549
Gene ExpressionSPRY4-IT1 [ NCBI-GEO ]   SPRY4-IT1 [ EBI - ARRAY_EXPRESS ]   SPRY4-IT1 [ SEEK ]   SPRY4-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPRY4-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100642175
GTEX Portal (Tissue expression)SPRY4-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPRY4-IT1
DMDM Disease mutations100642175
Blocks (Seattle)SPRY4-IT1
Protein Interaction databases
BioGRIDSPRY4-IT1
STRING (EMBL)SPRY4-IT1
ZODIACSPRY4-IT1
Ontologies - Pathways
Huge Navigator SPRY4-IT1 [HugePedia]
snp3D : Map Gene to Disease100642175
BioCentury BCIQSPRY4-IT1
ClinGenSPRY4-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100642175
Clinical trialSPRY4-IT1
Miscellaneous
canSAR (ICR)SPRY4-IT1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRY4-IT1
EVEXSPRY4-IT1
GoPubMedSPRY4-IT1
iHOPSPRY4-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:36:23 CET 2017

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