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SPRYD4 (SPRY domain containing 4)

Identity

Alias_symbol (synonym)DKFZp686N0877
Other alias-
HGNC (Hugo) SPRYD4
LocusID (NCBI) 283377
Atlas_Id 74211
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 56468517 and ends at 56470983 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM214 (2p23.3) / SPRYD4 (12q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRYD4   27468
Cards
Entrez_Gene (NCBI)SPRYD4  283377  SPRY domain containing 4
Aliases
GeneCards (Weizmann)SPRYD4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:56468517-56470983 [Contig_View]  SPRYD4 [Vega]
TCGA cBioPortalSPRYD4
AceView (NCBI)SPRYD4
Genatlas (Paris)SPRYD4
WikiGenes283377
SOURCE (Princeton)SPRYD4
Genetics Home Reference (NIH)SPRYD4
Genomic and cartography
GoldenPath hg38 (UCSC)SPRYD4  -     chr12:56468517-56470983 +  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPRYD4  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblSPRYD4 - 12q13.3 [CytoView hg19]  SPRYD4 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBISPRYD4 [Mapview hg19]  SPRYD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF289571 AF451989 AK074733 AK291920 AK300594
RefSeq transcript (Entrez)NM_207344
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPRYD4
Cluster EST : UnigeneHs.128676 [ NCBI ]
CGAP (NCI)Hs.128676
Gene ExpressionSPRYD4 [ NCBI-GEO ]   SPRYD4 [ EBI - ARRAY_EXPRESS ]   SPRYD4 [ SEEK ]   SPRYD4 [ MEM ]
Gene Expression Viewer (FireBrowse)SPRYD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283377
GTEX Portal (Tissue expression)SPRYD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW59   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW59  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW59
Splice isoforms : SwissVarQ8WW59
PhosPhoSitePlusQ8WW59
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom   
Domain families : Pfam (Sanger)SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00622   
Domain families : Smart (EMBL)SPRY (SM00449)  
Conserved Domain (NCBI)SPRYD4
DMDM Disease mutations283377
Blocks (Seattle)SPRYD4
SuperfamilyQ8WW59
Peptide AtlasQ8WW59
HPRD11251
IPIIPI00291643   IPI01015359   IPI00333881   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW59
IntAct (EBI)Q8WW59
BioGRIDSPRYD4
STRING (EMBL)SPRYD4
ZODIACSPRYD4
Ontologies - Pathways
QuickGOQ8WW59
Ontology : AmiGOmolecular_function  nucleus  mitochondrion  biological_process  
Ontology : EGO-EBImolecular_function  nucleus  mitochondrion  biological_process  
NDEx NetworkSPRYD4
Atlas of Cancer Signalling NetworkSPRYD4
Wikipedia pathwaysSPRYD4
Orthology - Evolution
OrthoDB283377
Phylogenetic Trees/Animal Genes : TreeFamSPRYD4
HOVERGENQ8WW59
HOGENOMQ8WW59
Homologs : HomoloGeneSPRYD4
Homology/Alignments : Family Browser (UCSC)SPRYD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPRYD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPRYD4
dbVarSPRYD4
ClinVarSPRYD4
1000_GenomesSPRYD4 
Exome Variant ServerSPRYD4
ExAC (Exome Aggregation Consortium)SPRYD4 (select the gene name)
Genetic variants : HAPMAP283377
Genomic Variants (DGV)SPRYD4 [DGVbeta]
DECIPHERSPRYD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPRYD4 
Mutations
ICGC Data PortalSPRYD4 
TCGA Data PortalSPRYD4 
Broad Tumor PortalSPRYD4
OASIS PortalSPRYD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPRYD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPRYD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SPRYD4
DgiDB (Drug Gene Interaction Database)SPRYD4
DoCM (Curated mutations)SPRYD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPRYD4 (select a term)
intoGenSPRYD4
Cancer3DSPRYD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPRYD4
Genetic Testing Registry SPRYD4
NextProtQ8WW59 [Medical]
TSGene283377
GENETestsSPRYD4
Target ValidationSPRYD4
Huge Navigator SPRYD4 [HugePedia]
snp3D : Map Gene to Disease283377
BioCentury BCIQSPRYD4
ClinGenSPRYD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283377
Chemical/Pharm GKB GenePA143485622
Clinical trialSPRYD4
Miscellaneous
canSAR (ICR)SPRYD4 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRYD4
EVEXSPRYD4
GoPubMedSPRYD4
iHOPSPRYD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:04 CEST 2017

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