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SPRYD7 (SPRY domain containing 7)

Identity

Alias_namesC13orf1
chromosome 13 open reading frame 1
Alias_symbol (synonym)CLLD6
Other alias
HGNC (Hugo) SPRYD7
LocusID (NCBI) 57213
Atlas_Id 74212
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 50486838 and ends at 50510637 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPRYD7   14297
Cards
Entrez_Gene (NCBI)SPRYD7  57213  SPRY domain containing 7
AliasesC13orf1; CLLD6
GeneCards (Weizmann)SPRYD7
Ensembl hg19 (Hinxton)ENSG00000123178 [Gene_View]  chr13:50486838-50510637 [Contig_View]  SPRYD7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000123178 [Gene_View]  chr13:50486838-50510637 [Contig_View]  SPRYD7 [Vega]
ICGC DataPortalENSG00000123178
TCGA cBioPortalSPRYD7
AceView (NCBI)SPRYD7
Genatlas (Paris)SPRYD7
WikiGenes57213
SOURCE (Princeton)SPRYD7
Genetics Home Reference (NIH)SPRYD7
Genomic and cartography
GoldenPath hg19 (UCSC)SPRYD7  -     chr13:50486838-50510637 -  13q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPRYD7  -     13q14.2   [Description]    (hg38-Dec_2013)
EnsemblSPRYD7 - 13q14.2 [CytoView hg19]  SPRYD7 - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBISPRYD7 [Mapview hg19]  SPRYD7 [Mapview hg38]
OMIM607866   
Gene and transcription
Genbank (Entrez)AF052154 AF055016 AF334405 AK290576 AK308818
RefSeq transcript (Entrez)NM_001127482 NM_020456
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)SPRYD7
Cluster EST : UnigeneHs.44235 [ NCBI ]
CGAP (NCI)Hs.44235
Alternative Splicing GalleryENSG00000123178
Gene ExpressionSPRYD7 [ NCBI-GEO ]   SPRYD7 [ EBI - ARRAY_EXPRESS ]   SPRYD7 [ SEEK ]   SPRYD7 [ MEM ]
Gene Expression Viewer (FireBrowse)SPRYD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57213
GTEX Portal (Tissue expression)SPRYD7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W111   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W111  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W111
Splice isoforms : SwissVarQ5W111
PhosPhoSitePlusQ5W111
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)   
Domains : Interpro (EBI)B30.2/SPRY    ConA-like_dom    SPRY_dom   
Domain families : Pfam (Sanger)SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00622   
Domain families : Smart (EMBL)SPRY (SM00449)  
Conserved Domain (NCBI)SPRYD7
DMDM Disease mutations57213
Blocks (Seattle)SPRYD7
SuperfamilyQ5W111
Human Protein AtlasENSG00000123178
Peptide AtlasQ5W111
HPRD08486
IPIIPI00411705   IPI00290764   
Protein Interaction databases
DIP (DOE-UCLA)Q5W111
IntAct (EBI)Q5W111
FunCoupENSG00000123178
BioGRIDSPRYD7
STRING (EMBL)SPRYD7
ZODIACSPRYD7
Ontologies - Pathways
QuickGOQ5W111
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkSPRYD7
Atlas of Cancer Signalling NetworkSPRYD7
Wikipedia pathwaysSPRYD7
Orthology - Evolution
OrthoDB57213
GeneTree (enSembl)ENSG00000123178
Phylogenetic Trees/Animal Genes : TreeFamSPRYD7
HOVERGENQ5W111
HOGENOMQ5W111
Homologs : HomoloGeneSPRYD7
Homology/Alignments : Family Browser (UCSC)SPRYD7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPRYD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPRYD7
dbVarSPRYD7
ClinVarSPRYD7
1000_GenomesSPRYD7 
Exome Variant ServerSPRYD7
ExAC (Exome Aggregation Consortium)SPRYD7 (select the gene name)
Genetic variants : HAPMAP57213
Genomic Variants (DGV)SPRYD7 [DGVbeta]
DECIPHER (Syndromes)13:50486838-50510637  ENSG00000123178
CONAN: Copy Number AnalysisSPRYD7 
Mutations
ICGC Data PortalSPRYD7 
TCGA Data PortalSPRYD7 
Broad Tumor PortalSPRYD7
OASIS PortalSPRYD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPRYD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPRYD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPRYD7
DgiDB (Drug Gene Interaction Database)SPRYD7
DoCM (Curated mutations)SPRYD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPRYD7 (select a term)
intoGenSPRYD7
Cancer3DSPRYD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607866   
Orphanet
MedgenSPRYD7
Genetic Testing Registry SPRYD7
NextProtQ5W111 [Medical]
TSGene57213
GENETestsSPRYD7
Huge Navigator SPRYD7 [HugePedia]
snp3D : Map Gene to Disease57213
BioCentury BCIQSPRYD7
ClinGenSPRYD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57213
Chemical/Pharm GKB GenePA25511
Clinical trialSPRYD7
Miscellaneous
canSAR (ICR)SPRYD7 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPRYD7
EVEXSPRYD7
GoPubMedSPRYD7
iHOPSPRYD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:36 CET 2017

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