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SPSB3 (splA/ryanodine receptor domain and SOCS box containing 3)

Identity

Alias_namesC16orf31
chromosome 16 open reading frame 31
Alias_symbol (synonym)SSB-3
Other aliasSSB3
HGNC (Hugo) SPSB3
LocusID (NCBI) 90864
Atlas_Id 74214
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1776738 and ends at 1781822 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DLGAP4 (20q11.23) / SPSB3 (16p13.3)SPSB3 (16p13.3) / MEIOB (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPSB3   30629
Cards
Entrez_Gene (NCBI)SPSB3  90864  splA/ryanodine receptor domain and SOCS box containing 3
AliasesC16orf31; SSB3
GeneCards (Weizmann)SPSB3
Ensembl hg19 (Hinxton)ENSG00000162032 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162032 [Gene_View]  chr16:1776738-1781822 [Contig_View]  SPSB3 [Vega]
ICGC DataPortalENSG00000162032
TCGA cBioPortalSPSB3
AceView (NCBI)SPSB3
Genatlas (Paris)SPSB3
WikiGenes90864
SOURCE (Princeton)SPSB3
Genetics Home Reference (NIH)SPSB3
Genomic and cartography
GoldenPath hg38 (UCSC)SPSB3  -     chr16:1776738-1781822 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPSB3  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblSPSB3 - 16p13.3 [CytoView hg19]  SPSB3 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBISPSB3 [Mapview hg19]  SPSB3 [Mapview hg38]
OMIM611659   
Gene and transcription
Genbank (Entrez)AF403028 AK057850 AK074190 AK302041 BC007588
RefSeq transcript (Entrez)NM_001324081 NM_080861
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPSB3
Cluster EST : UnigeneHs.592080 [ NCBI ]
CGAP (NCI)Hs.592080
Alternative Splicing GalleryENSG00000162032
Gene ExpressionSPSB3 [ NCBI-GEO ]   SPSB3 [ EBI - ARRAY_EXPRESS ]   SPSB3 [ SEEK ]   SPSB3 [ MEM ]
Gene Expression Viewer (FireBrowse)SPSB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90864
GTEX Portal (Tissue expression)SPSB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PJ21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PJ21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PJ21
Splice isoforms : SwissVarQ6PJ21
PhosPhoSitePlusQ6PJ21
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    SOCS (PS50225)   
Domains : Interpro (EBI)B30.2/SPRY    ConA-like_dom    SOCS_box    SPRY_dom   
Domain families : Pfam (Sanger)SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00622   
Domain families : Smart (EMBL)SOCS_box (SM00969)  SPRY (SM00449)  
Conserved Domain (NCBI)SPSB3
DMDM Disease mutations90864
Blocks (Seattle)SPSB3
SuperfamilyQ6PJ21
Human Protein AtlasENSG00000162032
Peptide AtlasQ6PJ21
HPRD18107
IPIIPI00412063   IPI00387049   
Protein Interaction databases
DIP (DOE-UCLA)Q6PJ21
IntAct (EBI)Q6PJ21
FunCoupENSG00000162032
BioGRIDSPSB3
STRING (EMBL)SPSB3
ZODIACSPSB3
Ontologies - Pathways
QuickGOQ6PJ21
Ontology : AmiGOprotein binding  intracellular  protein ubiquitination  intracellular signal transduction  
Ontology : EGO-EBIprotein binding  intracellular  protein ubiquitination  intracellular signal transduction  
NDEx NetworkSPSB3
Atlas of Cancer Signalling NetworkSPSB3
Wikipedia pathwaysSPSB3
Orthology - Evolution
OrthoDB90864
GeneTree (enSembl)ENSG00000162032
Phylogenetic Trees/Animal Genes : TreeFamSPSB3
HOVERGENQ6PJ21
HOGENOMQ6PJ21
Homologs : HomoloGeneSPSB3
Homology/Alignments : Family Browser (UCSC)SPSB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPSB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPSB3
dbVarSPSB3
ClinVarSPSB3
1000_GenomesSPSB3 
Exome Variant ServerSPSB3
ExAC (Exome Aggregation Consortium)SPSB3 (select the gene name)
Genetic variants : HAPMAP90864
Genomic Variants (DGV)SPSB3 [DGVbeta]
DECIPHERSPSB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPSB3 
Mutations
ICGC Data PortalSPSB3 
TCGA Data PortalSPSB3 
Broad Tumor PortalSPSB3
OASIS PortalSPSB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPSB3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPSB3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPSB3
DgiDB (Drug Gene Interaction Database)SPSB3
DoCM (Curated mutations)SPSB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPSB3 (select a term)
intoGenSPSB3
Cancer3DSPSB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611659   
Orphanet
MedgenSPSB3
Genetic Testing Registry SPSB3
NextProtQ6PJ21 [Medical]
TSGene90864
GENETestsSPSB3
Target ValidationSPSB3
Huge Navigator SPSB3 [HugePedia]
snp3D : Map Gene to Disease90864
BioCentury BCIQSPSB3
ClinGenSPSB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90864
Chemical/Pharm GKB GenePA142670873
Clinical trialSPSB3
Miscellaneous
canSAR (ICR)SPSB3 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPSB3
EVEXSPSB3
GoPubMedSPSB3
iHOPSPSB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:26 CEST 2017

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