Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPTBN1 (spectrin beta, non-erythrocytic 1)

Identity

Alias (NCBI)ELF
HEL102
SPTB2
betaSpII
HGNC (Hugo) SPTBN1
HGNC Alias nameFodrin beta chain
 Beta-II spectrin
LocusID (NCBI) 6711
Atlas_Id 53313
Location 2p16.2  [Link to chromosome band 2p16]
Location_base_pair Starts at 54558394 and ends at 54662308 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CRKL (22q11.21) / SPTBN1 (2p16.2)DLG3 (Xq13.1) / SPTBN1 (2p16.2)EEF2 (19p13.3) / SPTBN1 (2p16.2)
FOS (14q24.3) / SPTBN1 (2p16.2)FOXN2 (2p16.3) / SPTBN1 (2p16.2)NCOA1 (2p23.3) / SPTBN1 (2p16.2)
RTN2 (19q13.32) / SPTBN1 (2p16.2)SND1 (7q32.1) / SPTBN1 (2p16.2)SPTBN1 (2p16.2) / ACYP2 (2p16.2)
SPTBN1 (2p16.2) / ECI2 (6p25.2)SPTBN1 (2p16.2) / ENO1 (1p36.23)SPTBN1 (2p16.2) / ERBIN (5q12.3)
SPTBN1 (2p16.2) / FLT3 (13q12.2)SPTBN1 (2p16.2) / GPATCH1 (19q13.11)SPTBN1 (2p16.2) / NADSYN1 (11q13.4)
SPTBN1 (2p16.2) / PDGFRB (5q32)SPTBN1 (2p16.2) / RPS4X (Xq13.1)SPTBN1 (2p16.2) / SERPINB1 (6p25.2)
SPTBN1 (2p16.2) / SF3A3 (1p34.3)SPTBN1 (2p16.2) / SPEN (1p36.21)SPTBN1 (2p16.2) / SPTBN1 (2p16.2)
TRPS1 (8q23.3) / SPTBN1 (2p16.2)ZHX3 (20q12) / SPTBN1 (2p16.2)FOXN2 2p16.3 / SPTBN1 2p16.2
SPTBN1 2p16.2 / ACYP2 2p16.2SPTBN1 2p16.2 / ECI2 6p25.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(2;5)(p21;q33) SPTBN1/PDGFRB
t(2;13)(p16;q12) SPTBN1/FLT3
t(2;18)(p16;q11) KCTD1/SPTBN1

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  FOXN2/SPTBN1 (2p16)
SPTBN1/ACYP2 (2p16)
t(2;6)(p16;p25) SPTBN1/ECI2

External links

Nomenclature
HGNC (Hugo)SPTBN1   11275
Cards
Entrez_Gene (NCBI)SPTBN1    spectrin beta, non-erythrocytic 1
AliasesELF; HEL102; SPTB2; betaSpII
GeneCards (Weizmann)SPTBN1
Ensembl hg19 (Hinxton)ENSG00000115306 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115306 [Gene_View]  ENSG00000115306 [Sequence]  chr2:54558394-54662308 [Contig_View]  SPTBN1 [Vega]
ICGC DataPortalENSG00000115306
TCGA cBioPortalSPTBN1
AceView (NCBI)SPTBN1
Genatlas (Paris)SPTBN1
SOURCE (Princeton)SPTBN1
Genetics Home Reference (NIH)SPTBN1
Genomic and cartography
GoldenPath hg38 (UCSC)SPTBN1  -     chr2:54558394-54662308 +  2p16.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPTBN1  -     2p16.2   [Description]    (hg19-Feb_2009)
GoldenPathSPTBN1 - 2p16.2 [CytoView hg19]  SPTBN1 - 2p16.2 [CytoView hg38]
ImmunoBaseENSG00000115306
genome Data Viewer NCBISPTBN1 [Mapview hg19]  
OMIM182790   
Gene and transcription
Genbank (Entrez)AB209551 AB209748 AB371586 AF218848 AF327441
RefSeq transcript (Entrez)NM_003128 NM_178313
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPTBN1
Alternative Splicing GalleryENSG00000115306
Gene ExpressionSPTBN1 [ NCBI-GEO ]   SPTBN1 [ EBI - ARRAY_EXPRESS ]   SPTBN1 [ SEEK ]   SPTBN1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPTBN1 [ Firebrowse - Broad ]
GenevisibleExpression of SPTBN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6711
GTEX Portal (Tissue expression)SPTBN1
Human Protein AtlasENSG00000115306-SPTBN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ01082   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ01082  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ01082
Splice isoforms : SwissVarQ01082
PhosPhoSitePlusQ01082
Domaine pattern : Prosite (Expaxy)ACTININ_1 (PS00019)    ACTININ_2 (PS00020)    CH (PS50021)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Actinin_actin-bd_CS    CH-domain    CH_dom_sf    PH-like_dom_sf    PH_9    PH_dom-spectrin-type    PH_domain    Spectrin/alpha-actinin    Spectrin_bsu    Spectrin_repeat   
Domain families : Pfam (Sanger)CH (PF00307)    PH_9 (PF15410)    Spectrin (PF00435)   
Domain families : Pfam (NCBI)pfam00307    pfam15410    pfam00435   
Domain families : Smart (EMBL)CH (SM00033)  PH (SM00233)  SPEC (SM00150)  
Conserved Domain (NCBI)SPTBN1
Blocks (Seattle)SPTBN1
PDB (RSDB)1AA2    1BKR    3EDV   
PDB Europe1AA2    1BKR    3EDV   
PDB (PDBSum)1AA2    1BKR    3EDV   
PDB (IMB)1AA2    1BKR    3EDV   
Structural Biology KnowledgeBase1AA2    1BKR    3EDV   
SCOP (Structural Classification of Proteins)1AA2    1BKR    3EDV   
CATH (Classification of proteins structures)1AA2    1BKR    3EDV   
SuperfamilyQ01082
Human Protein Atlas [tissue]ENSG00000115306-SPTBN1 [tissue]
Peptide AtlasQ01082
HPRD01683
IPIIPI00005614   IPI00328230   IPI00333015   IPI00969090   IPI01025530   
Protein Interaction databases
DIP (DOE-UCLA)Q01082
IntAct (EBI)Q01082
BioGRIDSPTBN1
STRING (EMBL)SPTBN1
ZODIACSPTBN1
Ontologies - Pathways
QuickGOQ01082
Ontology : AmiGOMAPK cascade  mitotic cytokinesis  RNA binding  actin binding  structural constituent of cytoskeleton  protein binding  calmodulin binding  phospholipid binding  nucleolus  cytoplasm  cytosol  ER to Golgi vesicle-mediated transport  plasma membrane organization  cytoskeleton organization  common-partner SMAD protein phosphorylation  axon guidance  spectrin  postsynaptic density  spectrin-associated cytoskeleton  ankyrin binding  ankyrin binding  axolemma  M band  cuticular plate  Golgi to plasma membrane protein transport  protein-containing complex binding  cadherin binding  GTPase binding  actin filament capping  regulation of SMAD protein signal transduction  extracellular exosome  membrane assembly  protein localization to plasma membrane  glutamatergic synapse  positive regulation of interleukin-2 secretion  regulation of protein localization to plasma membrane  positive regulation of protein localization to plasma membrane  
Ontology : EGO-EBIMAPK cascade  mitotic cytokinesis  RNA binding  actin binding  structural constituent of cytoskeleton  protein binding  calmodulin binding  phospholipid binding  nucleolus  cytoplasm  cytosol  ER to Golgi vesicle-mediated transport  plasma membrane organization  cytoskeleton organization  common-partner SMAD protein phosphorylation  axon guidance  spectrin  postsynaptic density  spectrin-associated cytoskeleton  ankyrin binding  ankyrin binding  axolemma  M band  cuticular plate  Golgi to plasma membrane protein transport  protein-containing complex binding  cadherin binding  GTPase binding  actin filament capping  regulation of SMAD protein signal transduction  extracellular exosome  membrane assembly  protein localization to plasma membrane  glutamatergic synapse  positive regulation of interleukin-2 secretion  regulation of protein localization to plasma membrane  positive regulation of protein localization to plasma membrane  
NDEx NetworkSPTBN1
Atlas of Cancer Signalling NetworkSPTBN1
Wikipedia pathwaysSPTBN1
Orthology - Evolution
OrthoDB6711
GeneTree (enSembl)ENSG00000115306
Phylogenetic Trees/Animal Genes : TreeFamSPTBN1
HOGENOMQ01082
Homologs : HomoloGeneSPTBN1
Homology/Alignments : Family Browser (UCSC)SPTBN1
Gene fusions - Rearrangements
Fusion : MitelmanFOXN2/SPTBN1 [2p16.3/2p16.2]  
Fusion : MitelmanSPTBN1/ACYP2 [2p16.2/2p16.2]  
Fusion : MitelmanSPTBN1/ECI2 [2p16.2/6p25.2]  
Fusion : MitelmanSPTBN1/PDGFRB [2p16.2/5q32]  
Fusion PortalFOXN2 2p16.3 SPTBN1 2p16.2 LUSC
Fusion PortalSPTBN1 2p16.2 ACYP2 2p16.2 BRCA OV
Fusion PortalSPTBN1 2p16.2 ECI2 6p25.2 PRAD
Fusion : QuiverSPTBN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPTBN1 [hg38]
dbVarSPTBN1
ClinVarSPTBN1
MonarchSPTBN1
1000_GenomesSPTBN1 
Exome Variant ServerSPTBN1
GNOMAD BrowserENSG00000115306
Varsome BrowserSPTBN1
Genomic Variants (DGV)SPTBN1 [DGVbeta]
DECIPHERSPTBN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPTBN1 
Mutations
ICGC Data PortalSPTBN1 
TCGA Data PortalSPTBN1 
Broad Tumor PortalSPTBN1
OASIS PortalSPTBN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPTBN1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPTBN1
Mutations and Diseases : HGMDSPTBN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPTBN1
DgiDB (Drug Gene Interaction Database)SPTBN1
DoCM (Curated mutations)SPTBN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPTBN1 (select a term)
intoGenSPTBN1
Cancer3DSPTBN1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182790   
Orphanet
DisGeNETSPTBN1
MedgenSPTBN1
Genetic Testing Registry SPTBN1
NextProtQ01082 [Medical]
GENETestsSPTBN1
Target ValidationSPTBN1
Huge Navigator SPTBN1 [HugePedia]
ClinGenSPTBN1
Clinical trials, drugs, therapy
MyCancerGenomeSPTBN1
Protein Interactions : CTD
Pharm GKB GenePA36104
PharosQ01082
Clinical trialSPTBN1
Miscellaneous
canSAR (ICR)SPTBN1 (select the gene name)
HarmonizomeSPTBN1
DataMed IndexSPTBN1
Probes
Litterature
PubMed160 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPTBN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:39:09 CET 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.