SPTLC3 (serine palmitoyltransferase, long chain base subunit 3)

Identity

Other names	C20orf38
	FLJ11112
	FLJ90790
	SPTLC2L
	dJ718P11
	dJ718P11.1
HGNC	SPTLC3
Location	20p12.1
Location_base_pair	Starts at 12937627 and ends at 13095411 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

External links

	Nomenclature
HGNC	SPTLC3   16253
Entrez_Gene	SPTLC3  55304  serine palmitoyltransferase, long chain base subunit 3
	Cards
GeneCards	SPTLC3
Ensembl	ENSG00000172296 [Gene_View]  SPTLC3 [Vega]
Genatlas	SPTLC3
	Genomic and cartography
GoldenPath	SPTLC3  -  20p12.1   chr20:12937627-13095411 +  20p12.1   [Description]    (hg18-March_2006)
Ensembl	SPTLC3 - 20p12.1 [CytoView]
NCBI	Mapview
OMIM	611120 Disease map [OMIM]
HomoloGene	SPTLC3
	Gene and transcription
Genbank	AK001974 [ ENTREZ ]
Genbank	AK075271 [ ENTREZ ]
Genbank	AL844429 [ ENTREZ ]
Genbank	BC005205 [ ENTREZ ]
Genbank	BC020656 [ ENTREZ ]
RefSeq	NM_018327 [ SRS ]    NM_018327 [ ENTREZ ]
RefSeq	AC_000063 [ SRS ]    AC_000063 [ ENTREZ ]
RefSeq	AC_000152 [ SRS ]    AC_000152 [ ENTREZ ]
RefSeq	NC_000020 [ SRS ]    NC_000020 [ ENTREZ ]
RefSeq	NT_011387 [ SRS ]    NT_011387 [ ENTREZ ]
RefSeq	NW_001838652 [ SRS ]    NW_001838652 [ ENTREZ ]
RefSeq	NW_927317 [ SRS ]    NW_927317 [ ENTREZ ]
CCDS	SPTLC3 CCDS - NCBI
AceView	SPTLC3 AceView - NCBI
Unigene	Hs.425023 [ SRS ]    Hs.425023 [ NCBI ]
Fast-db	5757 (alternative variants)
	Protein : pattern, domain, 3D structure
HPRD	12765
	Protein Interaction databases
	Polymorphism : SNP, mutations, diseases
OMIM	611120    [ map ]
GENETests	611120
SNP	SPTLC3 [dbSNP-NCBI]
SNP	NM_018327 [SNP-NCI]
SNP	SPTLC3 [GeneSNPs - Utah]  SPTLC3] [HGBASE - SRS]
HAPMAP	SPTLC3 [HAPMAP]
HGMD	SPTLC3
Genetic Association	SPTLC3
CDC HuGE	SPTLC3
	General knowledge
Family Browser	SPTLC3 [UCSC Family Browser]
SOURCE	NM_018327
SMD	Hs.425023
SAGE	Hs.425023
GO	serine C-palmitoyltransferase activity [Amigo]  serine C-palmitoyltransferase activity
GO	endoplasmic reticulum [Amigo]  endoplasmic reticulum
GO	endoplasmic reticulum membrane [Amigo]  endoplasmic reticulum membrane
GO	acyltransferase activity [Amigo]  acyltransferase activity
GO	biosynthetic process [Amigo]  biosynthetic process
GO	membrane [Amigo]  membrane
GO	integral to membrane [Amigo]  integral to membrane
GO	transferase activity, transferring nitrogenous groups [Amigo]  transferase activity, transferring nitrogenous groups
GO	pyridoxal phosphate binding [Amigo]  pyridoxal phosphate binding
PubGene	SPTLC3
TreeFam	SPTLC3
CTD	55304 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SPTLC3 Related clones (RZPD - Berlin)
	PubMed
PubMed	7 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu Nov 27 14:13:27 2008