Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPTSSA (serine palmitoyltransferase small subunit A)

Identity

Alias_namesC14orf147
chromosome 14 open reading frame 147
serine palmitoyltransferase, small subunit A
Alias_symbol (synonym)ssSPTa
Other aliasSSSPTA
HGNC (Hugo) SPTSSA
LocusID (NCBI) 171546
Atlas_Id 74219
Location 14q13.1  [Link to chromosome band 14q13]
Location_base_pair Starts at 34432938 and ends at 34462262 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SPTSSA (14q13.1) / SPTSSA (14q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPTSSA   20361
Cards
Entrez_Gene (NCBI)SPTSSA  171546  serine palmitoyltransferase small subunit A
AliasesC14orf147; SSSPTA
GeneCards (Weizmann)SPTSSA
Ensembl hg19 (Hinxton)ENSG00000165389 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165389 [Gene_View]  chr14:34432938-34462262 [Contig_View]  SPTSSA [Vega]
ICGC DataPortalENSG00000165389
TCGA cBioPortalSPTSSA
AceView (NCBI)SPTSSA
Genatlas (Paris)SPTSSA
WikiGenes171546
SOURCE (Princeton)SPTSSA
Genetics Home Reference (NIH)SPTSSA
Genomic and cartography
GoldenPath hg38 (UCSC)SPTSSA  -     chr14:34432938-34462262 -  14q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPTSSA  -     14q13.1   [Description]    (hg19-Feb_2009)
EnsemblSPTSSA - 14q13.1 [CytoView hg19]  SPTSSA - 14q13.1 [CytoView hg38]
Mapping of homologs : NCBISPTSSA [Mapview hg19]  SPTSSA [Mapview hg38]
OMIM613540   
Gene and transcription
Genbank (Entrez)AI765163 AK001993 AK315409 AL080066 BC016805
RefSeq transcript (Entrez)NM_138288
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPTSSA
Cluster EST : UnigeneHs.740577 [ NCBI ]
CGAP (NCI)Hs.740577
Alternative Splicing GalleryENSG00000165389
Gene ExpressionSPTSSA [ NCBI-GEO ]   SPTSSA [ EBI - ARRAY_EXPRESS ]   SPTSSA [ SEEK ]   SPTSSA [ MEM ]
Gene Expression Viewer (FireBrowse)SPTSSA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)171546
GTEX Portal (Tissue expression)SPTSSA
Human Protein AtlasENSG00000165389-SPTSSA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969W0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969W0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969W0
Splice isoforms : SwissVarQ969W0
PhosPhoSitePlusQ969W0
Domains : Interpro (EBI)Ser_palmitoyltrfase_ssu-like   
Domain families : Pfam (Sanger)SPT_ssu-like (PF11779)   
Domain families : Pfam (NCBI)pfam11779   
Conserved Domain (NCBI)SPTSSA
DMDM Disease mutations171546
Blocks (Seattle)SPTSSA
SuperfamilyQ969W0
Human Protein Atlas [tissue]ENSG00000165389-SPTSSA [tissue]
Peptide AtlasQ969W0
HPRD16610
IPIIPI00873285   
Protein Interaction databases
DIP (DOE-UCLA)Q969W0
IntAct (EBI)Q969W0
FunCoupENSG00000165389
BioGRIDSPTSSA
STRING (EMBL)SPTSSA
ZODIACSPTSSA
Ontologies - Pathways
QuickGOQ969W0
Ontology : AmiGOserine C-palmitoyltransferase activity  serine C-palmitoyltransferase activity  serine C-palmitoyltransferase activity  protein binding  endoplasmic reticulum membrane  integral component of membrane  serine C-palmitoyltransferase complex  sphingolipid biosynthetic process  ceramide biosynthetic process  
Ontology : EGO-EBIserine C-palmitoyltransferase activity  serine C-palmitoyltransferase activity  serine C-palmitoyltransferase activity  protein binding  endoplasmic reticulum membrane  integral component of membrane  serine C-palmitoyltransferase complex  sphingolipid biosynthetic process  ceramide biosynthetic process  
NDEx NetworkSPTSSA
Atlas of Cancer Signalling NetworkSPTSSA
Wikipedia pathwaysSPTSSA
Orthology - Evolution
OrthoDB171546
GeneTree (enSembl)ENSG00000165389
Phylogenetic Trees/Animal Genes : TreeFamSPTSSA
HOVERGENQ969W0
HOGENOMQ969W0
Homologs : HomoloGeneSPTSSA
Homology/Alignments : Family Browser (UCSC)SPTSSA
Gene fusions - Rearrangements
Tumor Fusion PortalSPTSSA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPTSSA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPTSSA
dbVarSPTSSA
ClinVarSPTSSA
1000_GenomesSPTSSA 
Exome Variant ServerSPTSSA
ExAC (Exome Aggregation Consortium)ENSG00000165389
GNOMAD BrowserENSG00000165389
Genetic variants : HAPMAP171546
Genomic Variants (DGV)SPTSSA [DGVbeta]
DECIPHERSPTSSA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPTSSA 
Mutations
ICGC Data PortalSPTSSA 
TCGA Data PortalSPTSSA 
Broad Tumor PortalSPTSSA
OASIS PortalSPTSSA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPTSSA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPTSSA
DgiDB (Drug Gene Interaction Database)SPTSSA
DoCM (Curated mutations)SPTSSA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPTSSA (select a term)
intoGenSPTSSA
Cancer3DSPTSSA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613540   
Orphanet
DisGeNETSPTSSA
MedgenSPTSSA
Genetic Testing Registry SPTSSA
NextProtQ969W0 [Medical]
TSGene171546
GENETestsSPTSSA
Target ValidationSPTSSA
Huge Navigator SPTSSA [HugePedia]
snp3D : Map Gene to Disease171546
BioCentury BCIQSPTSSA
ClinGenSPTSSA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD171546
Chemical/Pharm GKB GenePA128394765
Clinical trialSPTSSA
Miscellaneous
canSAR (ICR)SPTSSA (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPTSSA
EVEXSPTSSA
GoPubMedSPTSSA
iHOPSPTSSA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:30:40 CET 2017

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