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SPTSSB (serine palmitoyltransferase, small subunit B)

Identity

Alias_namesC3orf57
chromosome 3 open reading frame 57
serine palmitoyltransferase, small subunit B
Alias_symbol (synonym)ADMP
ssSPTb
Other aliasSSSPTB
HGNC (Hugo) SPTSSB
LocusID (NCBI) 165679
Atlas_Id 74220
Location 3q26.1  [Link to chromosome band 3q26]
Location_base_pair Starts at 161062580 and ends at 161089871 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPTSSB   24045
Cards
Entrez_Gene (NCBI)SPTSSB  165679  serine palmitoyltransferase, small subunit B
AliasesADMP; C3orf57; SSSPTB
GeneCards (Weizmann)SPTSSB
Ensembl hg19 (Hinxton) [Gene_View]  chr3:161062580-161089871 [Contig_View]  SPTSSB [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:161062580-161089871 [Contig_View]  SPTSSB [Vega]
TCGA cBioPortalSPTSSB
AceView (NCBI)SPTSSB
Genatlas (Paris)SPTSSB
WikiGenes165679
SOURCE (Princeton)SPTSSB
Genetics Home Reference (NIH)SPTSSB
Genomic and cartography
GoldenPath hg19 (UCSC)SPTSSB  -     chr3:161062580-161089871 -  3q26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPTSSB  -     3q26.1   [Description]    (hg38-Dec_2013)
EnsemblSPTSSB - 3q26.1 [CytoView hg19]  SPTSSB - 3q26.1 [CytoView hg38]
Mapping of homologs : NCBISPTSSB [Mapview hg19]  SPTSSB [Mapview hg38]
OMIM610412   
Gene and transcription
Genbank (Entrez)AF458592 AK123348 AK312144 BC037817 BC065208
RefSeq transcript (Entrez)NM_001040100 NM_145035
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)SPTSSB
Cluster EST : UnigeneHs.369104 [ NCBI ]
CGAP (NCI)Hs.369104
Gene ExpressionSPTSSB [ NCBI-GEO ]   SPTSSB [ EBI - ARRAY_EXPRESS ]   SPTSSB [ SEEK ]   SPTSSB [ MEM ]
Gene Expression Viewer (FireBrowse)SPTSSB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165679
GTEX Portal (Tissue expression)SPTSSB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFR3
Splice isoforms : SwissVarQ8NFR3
PhosPhoSitePlusQ8NFR3
Domains : Interpro (EBI)Ser_palmitoyltrfase_ssu-like   
Domain families : Pfam (Sanger)DUF3317 (PF11779)   
Domain families : Pfam (NCBI)pfam11779   
Conserved Domain (NCBI)SPTSSB
DMDM Disease mutations165679
Blocks (Seattle)SPTSSB
SuperfamilyQ8NFR3
Peptide AtlasQ8NFR3
HPRD16476
IPIIPI00168881   IPI00396287   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFR3
IntAct (EBI)Q8NFR3
BioGRIDSPTSSB
STRING (EMBL)SPTSSB
ZODIACSPTSSB
Ontologies - Pathways
QuickGOQ8NFR3
Ontology : AmiGOserine C-palmitoyltransferase activity  protein binding  integral component of membrane  serine C-palmitoyltransferase complex  sphingolipid biosynthetic process  
Ontology : EGO-EBIserine C-palmitoyltransferase activity  protein binding  integral component of membrane  serine C-palmitoyltransferase complex  sphingolipid biosynthetic process  
NDEx NetworkSPTSSB
Atlas of Cancer Signalling NetworkSPTSSB
Wikipedia pathwaysSPTSSB
Orthology - Evolution
OrthoDB165679
Phylogenetic Trees/Animal Genes : TreeFamSPTSSB
HOVERGENQ8NFR3
HOGENOMQ8NFR3
Homologs : HomoloGeneSPTSSB
Homology/Alignments : Family Browser (UCSC)SPTSSB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPTSSB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPTSSB
dbVarSPTSSB
ClinVarSPTSSB
1000_GenomesSPTSSB 
Exome Variant ServerSPTSSB
ExAC (Exome Aggregation Consortium)SPTSSB (select the gene name)
Genetic variants : HAPMAP165679
Genomic Variants (DGV)SPTSSB [DGVbeta]
DECIPHER (Syndromes)3:161062580-161089871  
CONAN: Copy Number AnalysisSPTSSB 
Mutations
ICGC Data PortalSPTSSB 
TCGA Data PortalSPTSSB 
Broad Tumor PortalSPTSSB
OASIS PortalSPTSSB [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPTSSB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPTSSB
DgiDB (Drug Gene Interaction Database)SPTSSB
DoCM (Curated mutations)SPTSSB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPTSSB (select a term)
intoGenSPTSSB
Cancer3DSPTSSB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610412   
Orphanet
MedgenSPTSSB
Genetic Testing Registry SPTSSB
NextProtQ8NFR3 [Medical]
TSGene165679
GENETestsSPTSSB
Huge Navigator SPTSSB [HugePedia]
snp3D : Map Gene to Disease165679
BioCentury BCIQSPTSSB
ClinGenSPTSSB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165679
Chemical/Pharm GKB GenePA143485333
Clinical trialSPTSSB
Miscellaneous
canSAR (ICR)SPTSSB (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPTSSB
EVEXSPTSSB
GoPubMedSPTSSB
iHOPSPTSSB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:38 CET 2017

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